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质子转移在突变中的作用。

The Role of Proton Transfer on Mutations.

作者信息

Srivastava Ruby

机构信息

Bioinformatics, CSIR-CCMB, Hyderabad, India.

出版信息

Front Chem. 2019 Aug 21;7:536. doi: 10.3389/fchem.2019.00536. eCollection 2019.

Abstract

Hydrogen bonds play a critical role in nucleobase studies as they encode genes, map protein structures, provide stability to the base pairs, and are involved in spontaneous and induced mutations. Proton transfer mechanism is a critical phenomenon that is related to the acid-base characteristics of the nucleobases in Watson-Crick base pairs. The energetic and dynamical behavior of the proton can be depicted from these characteristics and their adjustment to the water molecules or the surrounding ions. Further, new pathways open up in which protonated nucleobases are generated by proton transfer from the ionized water molecules and elimination of a hydroxyl radical in this review, the analysis will be focused on understanding the mechanism of untargeted mutations in canonical, wobble, Hoogsteen pairs, and mutagenic tautomers through the non-covalent interactions. Further, rare tautomer formation through the single proton transfer (SPT) and the double proton transfer (DPT), quantum tunneling in nucleobases, radiation-induced bystander effects, role of water in proton transfer (PT) reactions, PT in anticancer drugs-DNA interaction, displacement and oriental polarization, possible models for mutations in DNA, genome instability, and role of proton transfer using kinetic parameters for RNA will be discussed.

摘要

氢键在核碱基研究中起着关键作用,因为它们编码基因、绘制蛋白质结构、为碱基对提供稳定性,并参与自发和诱导突变。质子转移机制是一种关键现象,与沃森-克里克碱基对中核碱基的酸碱特性相关。质子的能量和动力学行为可以从这些特性以及它们对水分子或周围离子的调整中描绘出来。此外,还开辟了新的途径,即通过离子化水分子的质子转移产生质子化核碱基并消除羟基自由基。在本综述中,分析将集中于通过非共价相互作用理解标准碱基对、摆动碱基对、 hoogsteen碱基对和诱变互变异构体中无定向突变的机制。此外,还将讨论通过单质子转移(SPT)和双质子转移(DPT)形成罕见互变异构体、核碱基中的量子隧穿、辐射诱导的旁观者效应、水在质子转移(PT)反应中的作用、抗癌药物与DNA相互作用中的PT、位移和取向极化、DNA突变的可能模型、基因组不稳定性以及使用RNA动力学参数的质子转移作用。

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