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根系相关微生物群落:微生物群落与抗氧化酶及植物生长相互作用的见解

Root-Associated Microbial Communities of : Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth.

作者信息

Garcia-Lemos Adriana M, Großkinsky Dominik K, Stokholm Michaela S, Lund Ole S, Nicolaisen Mette Haubjerg, Roitsch Thomas G, Veierskov Bjarke, Nybroe Ole

机构信息

Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Frederiksberg, Denmark.

Copenhagen Plant Science Centre, Faculty of Science, University of Copenhagen, Frederiksberg, Denmark.

出版信息

Front Microbiol. 2019 Aug 22;10:1937. doi: 10.3389/fmicb.2019.01937. eCollection 2019.

Abstract

is a major Christmas tree species in Europe, but their uneven and prolonged growth slows down their production. By a 16S and 18S rRNA gene amplicon sequencing approach, we performed a characterization of root-associated bacterial and fungal communities for three-year-old plants collected from two nurseries in Denmark and Germany and displaying different growth patterns (small versus tall plants). Proteobacteria had the highest relative abundance at both sampling sites and plant sizes, and Ascomycota was the most abundant fungal phylum. At the order level, Acidobacteriales, Actinomycetales, Burkholderiales, Rhizobiales, and Xanthomonadales represented the bacterial core microbiome of , independently of the sampling site or plant size, while the fungal core microbiome included members of the Agaricales, Hypocreales, and Pezizales. Principal Coordinate Analysis indicated that both bacterial and fungal communities clustered according to the sampling site pointing to the significance of soil characteristics and climatic conditions for the composition of root-associated microbial communities. Major differences between communities from tall and small plants were a dominance of the potential pathogen (Hypocreales) in the small plants from Germany, while Agaricales, that includes reported beneficial ectomycorrhizal fungi, dominated in the tall plants. An evaluation of plant root antioxidative enzyme profiles showed higher levels of the antioxidative enzymes ascorbate peroxidase, peroxidase, and superoxide dismutase in small plants compared to tall plants. We suggest that the higher antioxidative enzyme activities combined with the growth arrest phenotype indicate higher oxidative stress levels in the small plants. Additionally, the correlations between the relative abundances of specific taxa of the microbiome with the plant antioxidative enzyme profiles were established. The main result was that many more bacterial taxa correlated positively than negatively with one or more antioxidative enzyme activity. This may suggest that the ability of bacteria to increase plant antioxidative enzyme defenses is widespread.

摘要

是欧洲主要的圣诞树品种,但其生长不均匀且持续时间长,减缓了其产量。通过16S和18S rRNA基因扩增子测序方法,我们对从丹麦和德国的两个苗圃收集的、具有不同生长模式(矮小植株与高大植株)的三年生植物的根际细菌和真菌群落进行了表征。在两个采样点和不同植株大小的情况下,变形菌门的相对丰度最高,子囊菌门是最丰富的真菌门。在目水平上,酸杆菌目、放线菌目、伯克霍尔德菌目、根瘤菌目和黄单胞菌目代表了的细菌核心微生物组,与采样点或植株大小无关,而真菌核心微生物组包括伞菌目、肉座菌目和盘菌目的成员。主坐标分析表明,细菌和真菌群落均根据采样点聚类,表明土壤特性和气候条件对根际微生物群落组成具有重要意义。高大植株和矮小植株群落之间的主要差异在于,来自德国的矮小植株中潜在病原体(肉座菌目)占优势,而包括已报道的有益外生菌根真菌的伞菌目在高大植株中占主导地位。对植物根系抗氧化酶谱的评估显示,与高大植株相比,矮小植株中的抗氧化酶抗坏血酸过氧化物酶、过氧化物酶和超氧化物歧化酶水平更高。我们认为,较高的抗氧化酶活性与生长停滞表型相结合表明矮小植株中的氧化应激水平较高。此外,还建立了微生物组特定分类群的相对丰度与植物抗氧化酶谱之间的相关性。主要结果是,与一种或多种抗氧化酶活性呈正相关的细菌分类群比呈负相关的多得多。这可能表明细菌增强植物抗氧化酶防御的能力很普遍

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d638/6714061/2023431f09a2/fmicb-10-01937-g001.jpg

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