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一种从头设计的蛋白质 Uno Ferro 能够高亲和力结合过渡金属,并稳定半醌自由基阴离子。

Uno Ferro, a de novo Designed Protein, Binds Transition Metals with High Affinity and Stabilizes Semiquinone Radical Anion.

机构信息

Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY, 13244, USA.

VIB Centre for Structural Biology, Vlaams Instituut voor Biotechnologie (VIB), Pleinlaan 2, Brussels, 1050, Belgium.

出版信息

Chemistry. 2019 Dec 2;25(67):15252-15256. doi: 10.1002/chem.201904020. Epub 2019 Oct 31.

Abstract

Metalloenzymes often utilize radicals in order to facilitate chemical reactions. Recently, DeGrado and co-workers have discovered that model proteins can efficiently stabilize semiquinone radical anion produced by oxidation of 3,5-di-tert-butylcatechol (DTBC) in the presence of two zinc ions. Here, we show that the number and the nature of metal ions have relatively minor effect on semiquinone stabilization in model proteins, with a single metal ion being sufficient for radical stabilization. The radical is stabilized by both metal ion, hydrophobic sequestration, and interactions with the hydrophilic residues in the protein interior resulting in a remarkable, nearly 500 mV change in the redox potential of the SQ /catechol couple compared to bulk aqueous solution. Moreover, we have created 4G-UFsc, a single metal ion-binding protein with pm affinity for zinc that is higher than any other reported model systems and is on par with many natural zinc-containing proteins. We expect that the robust and easy-to-modify DFsc/UFsc family of proteins will become a versatile tool for mechanistic model studies of metalloenzymes.

摘要

金属酶通常利用自由基来促进化学反应。最近,DeGrado 及其同事发现,在存在两个锌离子的情况下,模型蛋白可以有效地稳定 3,5-二叔丁基邻苯二酚 (DTBC) 氧化产生的半醌自由基阴离子。在这里,我们表明金属离子的数量和性质对模型蛋白中半醌的稳定作用相对较小,单个金属离子足以稳定自由基。自由基通过金属离子、疏水性隔离以及与蛋白质内部亲水性残基的相互作用而稳定,导致 SQ /邻苯二酚偶联的氧化还原电位与在水溶液中的相比发生显著变化,约为 500 mV。此外,我们已经创建了 4G-UFsc,这是一种具有 pm 级亲和力的单金属离子结合蛋白,其锌亲和力高于任何其他报道的模型系统,与许多天然含锌蛋白相当。我们预计,DFsc/UFsc 家族的这种稳健且易于修饰的蛋白将成为研究金属酶的机制模型的通用工具。

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本文引用的文献

1
De Novo Design of Four-Helix Bundle Metalloproteins: One Scaffold, Diverse Reactivities.
Acc Chem Res. 2019 May 21;52(5):1148-1159. doi: 10.1021/acs.accounts.8b00674. Epub 2019 Apr 11.
2
An efficient, step-economical strategy for the design of functional metalloproteins.
Nat Chem. 2019 May;11(5):434-441. doi: 10.1038/s41557-019-0218-9. Epub 2019 Feb 18.
4
Artificial Metalloproteins for Binding and Stabilization of a Semiquinone Radical.
Inorg Chem. 2017 Nov 6;56(21):13293-13299. doi: 10.1021/acs.inorgchem.7b02073.
5
Nitrogenases-A Tale of Carbon Atom(s).
Angew Chem Int Ed Engl. 2016 Jul 11;55(29):8216-26. doi: 10.1002/anie.201600010. Epub 2016 May 20.
6
Designed metalloprotein stabilizes a semiquinone radical.
Nat Chem. 2016 Apr;8(4):354-9. doi: 10.1038/nchem.2453. Epub 2016 Feb 15.
7
Fully Flexible Docking of Medium Sized Ligand Libraries with RosettaLigand.
PLoS One. 2015 Jul 24;10(7):e0132508. doi: 10.1371/journal.pone.0132508. eCollection 2015.
8
Design of allosterically regulated protein catalysts.
Biochemistry. 2015 Feb 24;54(7):1444-56. doi: 10.1021/bi5015248. Epub 2015 Feb 12.
9
A two-electron-shell game: intermediates of the extradiol-cleaving catechol dioxygenases.
J Biol Inorg Chem. 2014 Jun;19(4-5):491-504. doi: 10.1007/s00775-014-1122-9. Epub 2014 Mar 11.
10
Reversible phenol oxidation and reduction in the structurally well-defined 2-Mercaptophenol-α₃C protein.
Biochemistry. 2013 Feb 26;52(8):1409-18. doi: 10.1021/bi301613p. Epub 2013 Feb 14.

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