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通过随机扩增多态性DNA聚合酶链反应(RAPD-PCR)分析对来自不同来源的[具体内容缺失]进行分子分型。

Molecular typing of from different sources by RAPD-PCR analysis.

作者信息

Zare Sahar, Derakhshandeh Abdollah, Haghkhah Masoud, Naziri Zahra, Broujeni Azar Motamedi

机构信息

Department of Pathobiology, School of Veterinary Medicine, Shiraz University, Shiraz, Iran.

出版信息

Heliyon. 2019 Aug 28;5(8):e02231. doi: 10.1016/j.heliyon.2019.e02231. eCollection 2019 Aug.

Abstract

is an opportunistic bacterium which is carried as a normal flora organism but has a major role in the epidemiology and pathogenesis of different staphylococcal infections in humans and animals. Fifty isolated from banknotes, foods, human infections and bovine mastitis were subjected to DNA fingerprinting by randomly amplified polymorphic DNA (RAPD) analysis to examine their genotypic polymorphism and investigate the amount of genetic relatedness among these various isolates. At 100% RAPD profile similarity level, isolates were classified into four, five and seven groups of the same clone, according to the RAPDPCR with OLP6, OLP11 and OLP13 primers, respectively. Amplification of the isolates resulted in several polymorphic bands ranged from >50 to >1500 bp in size. Maximum number of bands was obtained by primer OLP13 which produced seven bands in bovine mastitis isolates. Most polymorphisms were observed in isolates of bovine mastitis and the lowest were associated with human infections isolates. There was no relationship between the RAPD patterns and the sources of isolates, except the three clusters which showed host specificity and only included the strains from the same sources. The results confirm the wide genotypic diversity of the studied strains. RAPD-PCR technique can be a valuable tool for assessing the genetic relationship, detection of polymorphism in and tracing the sources and management of infections.

摘要

是一种机会致病菌,作为正常菌群存在,但在人类和动物不同葡萄球菌感染的流行病学和发病机制中起主要作用。从钞票、食品、人类感染和牛乳腺炎中分离出的50株菌株,通过随机扩增多态性DNA(RAPD)分析进行DNA指纹图谱分析,以检测其基因型多态性,并研究这些不同分离株之间的遗传相关性程度。在100%的RAPD图谱相似性水平下,根据分别使用OLP6、OLP11和OLP13引物进行的RAPD-PCR,分离株分别被分为四个、五个和七个相同克隆的组。对分离株的扩增产生了几条大小在>50至>1500 bp范围内的多态性条带。引物OLP13获得的条带数量最多,在牛乳腺炎分离株中产生了七条条带。大多数多态性在牛乳腺炎分离株中观察到,而最低的与人类感染分离株相关。除了三个显示宿主特异性且仅包括来自相同来源菌株的聚类外,RAPD模式与分离株来源之间没有关系。结果证实了所研究菌株的广泛基因型多样性。RAPD-PCR技术可成为评估遗传关系、检测多态性以及追踪感染源和管理感染的有价值工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8639/6728420/8ee1fa17fc54/gr1.jpg

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