• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

压力在装配逆向设计中的作用。

The role of pressure in inverse design for assembly.

机构信息

McKetta Department of Chemical Engineering, University of Texas at Austin, Austin, Texas 78712, USA.

出版信息

J Chem Phys. 2019 Sep 14;151(10):104104. doi: 10.1063/1.5112766.

DOI:10.1063/1.5112766
PMID:31521076
Abstract

Isotropic pairwise interactions that promote the self-assembly of complex particle morphologies have been discovered by inverse design strategies derived from the molecular coarse-graining literature. While such approaches provide an avenue to reproduce structural correlations, thermodynamic quantities such as the pressure have typically not been considered in self-assembly applications. In this work, we demonstrate that relative entropy optimization can be used to discover potentials that self-assemble into targeted cluster morphologies with a prescribed pressure when the iterative simulations are performed in the isothermal-isobaric ensemble. The benefits of this approach are twofold. First, the structure and the thermodynamics associated with the optimized interaction can be controlled simultaneously. Second, by varying the pressure in the optimization, a family of interparticle potentials that all self-assemble the same structure can be systematically discovered, allowing for a deeper understanding of self-assembly of a given target structure and providing multiple assembly routes for its realization. Selecting an appropriate simulation ensemble to control the thermodynamic properties of interest is a general design strategy that could also be used to discover interaction potentials that self-assemble structures having, for example, a specified chemical potential.

摘要

通过源自分子粗粒化文献的反设计策略,发现了促进复杂颗粒形态自组装的各向同性成对相互作用。虽然这些方法为重现结构相关性提供了途径,但在自组装应用中,通常不考虑压力等热力学量。在这项工作中,我们证明了相对熵优化可用于发现当在等温等压系综中进行迭代模拟时,能够自组装成具有规定压力的目标团簇形态的势。这种方法有两个优点。首先,可以同时控制优化相互作用的结构和热力学。其次,通过在优化中改变压力,可以系统地发现一系列能够自组装相同结构的粒子间势,从而更深入地了解给定目标结构的自组装,并为其实现提供多种组装途径。选择适当的模拟系综来控制感兴趣的热力学性质是一种通用的设计策略,也可用于发现能够自组装具有特定化学势的结构的相互作用势。

相似文献

1
The role of pressure in inverse design for assembly.压力在装配逆向设计中的作用。
J Chem Phys. 2019 Sep 14;151(10):104104. doi: 10.1063/1.5112766.
2
Inverse design of simple pair potentials for the self-assembly of complex structures.用于复杂结构自组装的简单对势的逆向设计。
J Chem Phys. 2018 Nov 28;149(20):204102. doi: 10.1063/1.5063802.
3
A test of systematic coarse-graining of molecular dynamics simulations: thermodynamic properties.分子动力学模拟的系统粗粒化测试:热力学性质。
J Chem Phys. 2012 Oct 28;137(16):164106. doi: 10.1063/1.4759463.
4
Inverse design of multicomponent assemblies.多组分组件的逆向设计。
J Chem Phys. 2018 Mar 14;148(10):104509. doi: 10.1063/1.5021648.
5
A Coarse-Grained Molecular Dynamics Study of Carbon Nanoparticle Aggregation.碳纳米颗粒聚集的粗粒度分子动力学研究
J Chem Theory Comput. 2006 May;2(3):504-12. doi: 10.1021/ct060030d.
6
Thermodynamic state-dependent structure-based coarse-graining of confined water.基于结构的受限水热力学态相依粗粒化。
J Chem Phys. 2012 Dec 7;137(21):214707. doi: 10.1063/1.4769297.
7
Inverse design of triblock Janus spheres for self-assembly of complex structures in the crystallization slot digital alchemy.用于在结晶槽数字炼金术自组装复杂结构的三嵌段 Janus 球的逆向设计。
Soft Matter. 2023 Apr 12;19(15):2726-2736. doi: 10.1039/d2sm01593e.
8
Van der Waals Perspective on Coarse-Graining: Progress toward Solving Representability and Transferability Problems.范德华观点下的粗粒化:解决代表性和可转移性问题的进展。
Acc Chem Res. 2016 Dec 20;49(12):2832-2840. doi: 10.1021/acs.accounts.6b00498. Epub 2016 Dec 8.
9
Thermodynamic, kinetic, and structural parameterization of human carbonic anhydrase interactions toward enhanced inhibitor design.针对增强抑制剂设计的人碳酸酐酶相互作用的热力学、动力学和结构参数化。
Q Rev Biophys. 2018 Jan;51:e10. doi: 10.1017/S0033583518000082.
10
An analytical coarse-graining method which preserves the free energy, structural correlations, and thermodynamic state of polymer melts from the atomistic to the mesoscale.一种解析粗粒化方法,可保留聚合物熔体从原子尺度到介观尺度的自由能、结构相关性和热力学状态。
J Chem Phys. 2014 May 28;140(20):204913. doi: 10.1063/1.4875923.