Research Department for Limnology, University of Innsbruck, Mondseestrasse 9, A-5310 Mondsee, Austria.
Int J Syst Evol Microbiol. 2019 Dec;69(12):3946-3954. doi: 10.1099/ijsem.0.003720.
Three actinobacterial strains, 27D-LEPI, 1B-Mac and 36A-HELLB, were isolated from small standing and running freshwater habitats located in Salzburg, Austria. Phylogenetic reconstructions based on 16S rRNA gene sequences and genome based on concatenated amino acid sequences of 119 single-copy genes referred the three strains within the family to the genus . The strains showed 100 % 16S rRNA gene sequence similarities to the previously described Rhodoluna limnophila. Cells were very small, approximately 0.5×0.3 µm, and showed a red pigmentation in liquid nutrient broth-soyotone-yeast extract medium as well as on agar plates. The strains assimilated a broad variety of substrates; however, the patterns differed a great deal between the three investigated strains. For strain 27D-LEPI, the major fatty acids were iso-C and anteiso-C; the identified polar lipids were phosphatidylglycerol and diphosphatidylglycerol; the major respiratory quinone was MK-11; and analysis of the peptidoglycan structure indicated the presence of type B2β (typeB10). The genomic DNA of the three strains was very small (1.4 Mbp) and had a DNA G+C content of 54 mol%. The investigated traits suggested that strains 36A-HELLB (=DSM 107805=JCM 32927), 1B-Mac (=DSM 107802=JCM 32925) and 27D-LEPI (=JCM 32926 =DSM 107804) represent a new species for which the name sp. nov. is proposed, with strain 27D-LEPI as the type strain.
三株放线菌菌株,27D-LEPI、1B-Mac 和 36A-HELLB,从位于奥地利萨尔茨堡的小静水和流水生境中分离出来。基于 16S rRNA 基因序列的系统发育重建和基于 119 个单拷贝基因的基因组序列,这三株菌都被归入到科的属中。这三株菌与先前描述的 Rhodoluna limnophila 的 16S rRNA 基因序列相似度达到 100%。细胞非常小,大约 0.5×0.3μm,在液体营养肉汤-大豆汤-酵母提取物培养基以及琼脂平板上显示出红色色素。这些菌株能够同化广泛的底物;然而,这三种被研究的菌株之间的模式差异很大。对于 27D-LEPI 菌株,主要脂肪酸为 iso-C 和 anteiso-C;鉴定的极性脂为磷脂酰甘油和双磷脂酰甘油;主要呼吸醌为 MK-11;肽聚糖结构分析表明存在 B2β 型(B10 型)。这三株菌的基因组 DNA 非常小(1.4 Mbp),GC 含量为 54 mol%。这些研究特征表明,菌株 36A-HELLB(=DSM 107805=JCM 32927)、1B-Mac(=DSM 107802=JCM 32925)和 27D-LEPI(=JCM 32926 =DSM 107804)代表一个新的物种,建议使用 27D-LEPI 菌株作为模式菌株,并将其命名为 sp. nov.。