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一株新的白藜芦醇代谢菌,从人粪便中分离出来,并对属的描述进行了修正。

sp. nov., a resveratrol-metabolizing bacterium isolated from human faeces and emended description of the genus .

机构信息

Department of Safety and Quality of Fruit and Vegetables, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Karlsruhe, Germany.

Department of Food Technology and Bioprocess Engineering, Max Rubner-Institut, Federal Research Institute of Nutrition and Food, Karlsruhe, Germany.

出版信息

Int J Syst Evol Microbiol. 2021 Sep;71(9). doi: 10.1099/ijsem.0.004987.

Abstract

The novel, anaerobic, Gram-positive, rod-shaped bacterial strain, ResAG-91, was isolated from a faecal sample of a male human volunteer. Analysis of the 16S rRNA gene sequence revealed that strain ResAG-91 showed high similarity to the type strains of subsp. and subsp. . Analysis of the whole draft genome sequences, i.e. digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI), of strain ResAG-91 and the type strains of species revealed that strain ResAG-91 represents a novel species of the genus . The genome size of strain ResAG-91 is 2.8 Mbp and the G+C content is 63.3 mol%. The major respiratory quinone of strain ResAG-91 was MMK-5 (methylmenaquinone). Major cellular fatty acids were C15 : 0 anteiso, C14 : 0 iso and C14 : 0 2-OH. Galactose and ribose were detected as major whole cell sugars. Furthermore, the peptidoglycan type of strain ResAG-91 was A1γ with meso-diaminopimelic acid. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, one unidentified lipid, three unidentified phospholipids and five unidentified glycolipids. Strain ResAG-91 was able to metabolize the stilbene resveratrol into dihydroresveratrol. On the basis of this polyphasic approach, including phenotypical, molecular (16S rRNA gene and whole genome sequencing) and biochemical (fatty acids, quinones, polar lipids, peptidoglycan, whole cell sugars, Rapid ID32A and API20A) analyses, we propose the novel species sp. nov. with the type and only strain ResAG-91 (=DSM 111416=JCM 34176=LMG 31897).

摘要

从一名男性人类志愿者的粪便样本中分离到一株新型、厌氧、革兰氏阳性、杆状细菌菌株 ResAG-91。16S rRNA 基因序列分析表明,菌株 ResAG-91 与 亚种和 亚种的模式菌株具有高度相似性。对菌株 ResAG-91 和 种的模式菌株的全基因组序列(即数字 DNA-DNA 杂交(dDDH)和平均核苷酸同一性(ANI))进行分析表明,菌株 ResAG-91 代表 属的一个新型种。菌株 ResAG-91 的基因组大小为 2.8 Mbp,G+C 含量为 63.3 mol%。菌株 ResAG-91 的主要呼吸醌为 MMK-5(甲基menaquinone)。主要细胞脂肪酸为 C15:0 anteiso、C14:0 iso 和 C14:0 2-OH。检测到半乳糖和核糖作为主要的全细胞糖。此外,菌株 ResAG-91 的肽聚糖类型为 A1γ,含有 meso-二氨基庚二酸。极性脂为磷脂酰甘油、双磷脂酰甘油、一种未鉴定的脂类、三种未鉴定的磷脂和五种未鉴定的糖脂。菌株 ResAG-91 能够将芪类化合物白藜芦醇代谢为二氢白藜芦醇。基于多相方法,包括表型、分子(16S rRNA 基因和全基因组测序)和生化(脂肪酸、醌类、极性脂、肽聚糖、全细胞糖、Rapid ID32A 和 API20A)分析,我们提出了一个新的物种,即 sp. nov.,其模式种和唯一菌株为 ResAG-91(=DSM 111416=JCM 34176=LMG 31897)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a12/8549271/3d4e3a78135e/ijsem-71-4987-g001.jpg

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