Huang Ke, Kelly Patrick John, Zhang Jilei, Yang Yi, Liu Weiguo, Kalalah Anwar, Wang Chengming
Yangzhou University College of Veterinary Medicine, Yangzhou, Jiangsu 225009, China.
Ross University School of Veterinary Medicine, Basseterre, Saint Kitts and Nevis.
Can J Infect Dis Med Microbiol. 2019 Sep 3;2019:3209013. doi: 10.1155/2019/3209013. eCollection 2019.
are vector-borne hemotropic bacteria that infect a wide variety of hosts, including people. While there are PCR assays that can identify individual or groups of , there is no reliable molecular method to simultaneously detect all species while maintaining genus specificity and sensitivity. By comparing highly conserved sequences of the better-recognized spp. on GenBank, we selected primers and probes for a genus-specific pan- FRET-qPCR. Then, a -based PCR was established by selecting primers for a highly variable region of , of which the sequenced amplicons could identify individual spp. The pan- FRET-qPCR did not detect negative controls ( spp., spp., spp., , and ) but reliably detected as few as two copies of the positive control () per reaction. There was complete agreement between the pan- FRET-qPCR and the -based PCR in detecting in convenience test samples from China and St. Kitts: cats (26%; 81/310), (20%; 12/60), cattle (24%; 23/98), and donkeys (4%; 1/20). Sequencing of the -based PCR products revealed (70%; 57/81) and (30%; 24/81) in cats and (67%; 8/12, and 33%; 4/12, respectively) and in cattle (23.5%; 23/98) and donkeys (4.0%; 1/24). The pan- FRET-qPCR and -based PCR we developed are highly sensitive and specific in detecting recognized spp. in a single reaction. The pan- FRET-qPCR is convenient requiring no gel electrophoresis and providing copy numbers, while the -based PCR reliably differentiates individual species. The use of these PCRs should greatly facilitate large-scale surveillance studies and the diagnosis of infections in clinical samples.
是通过媒介传播的嗜血性细菌,可感染包括人类在内的多种宿主。虽然有一些聚合酶链式反应(PCR)检测方法可以识别单个或一组,但没有可靠的分子方法能在保持属特异性和敏感性的同时同时检测所有物种。通过比较GenBank上公认的 spp. 的高度保守序列,我们为属特异性泛 FRET-qPCR 选择了引物和探针。然后,通过为 的一个高度可变区域选择引物建立了基于 的PCR,其测序扩增子可以识别单个 spp.。泛 FRET-qPCR 未检测到阴性对照( spp.、 spp.、 spp.、 和 ),但每个反应能可靠地检测到低至两个阳性对照( )拷贝。在检测来自中国和圣基茨的便利性测试样本中的 时,泛 FRET-qPCR 和基于 的PCR完全一致:猫(26%;81/310)、 (20%;12/60)、牛(24%;23/98)和驴(4%;1/20)。基于 的PCR产物测序显示猫中有 (70%;57/81)和 (30%;24/81),牛中有 (分别为67%;8/12和33%;4/12)以及驴中有 (23.5%;23/98)和 (4.0%;1/24)。我们开发的泛 FRET-qPCR 和基于 的PCR在单次反应中检测公认的 spp. 时具有高度敏感性和特异性。泛 FRET-qPCR 很方便,无需凝胶电泳并能提供拷贝数,而基于 的PCR能可靠地区分单个 物种。这些PCR的使用应极大地促进大规模监测研究以及临床样本中感染的诊断。