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鉴定与睡眠剥夺相关的潜在基因特征。

Identification of Potential Gene Signatures Related to Sleep Deprivation.

机构信息

Department of Neurology, the Affiliated WuXi NO.2 People's Hospital of Nanjing Medical University, Wuxi, China.

Department of Medical Imaging, Affiliated Hospital of Jiangnan University, Wuxi China.

出版信息

J Comput Biol. 2020 Jun;27(6):904-913. doi: 10.1089/cmb.2019.0177. Epub 2019 Oct 3.

DOI:10.1089/cmb.2019.0177
PMID:31573330
Abstract

This study aimed to identify possible therapeutic targets involved in sleep deprivation (SD) risks. GSE77393 data set was acquired from Gene Expression Omnibus database. Functional analysis and protein-protein interaction (PPI) analysis were used to extract the differentially expressed genes (DEGs) between two SD samples and control samples. Moreover, submodule network with the same function was further extracted and the functional enrichment analysis of corresponding genes was carried out. Afterward, the transcriptional regulation analysis and drug-gene interaction were also carried out to identify the essential genes associated with SD susceptibility. Totally, 121 DEGs, including 90 consistently upregulated DEGs and 31 downregulated DEGs, were screened and the results of functional analysis indicated that upregulated genes were related to learning or memory and response to drug, whereas downregulated DEGs were mainly responsible for response to UV and cell differentiation. Moreover, PPI network and submodule analysis revealed that many key genes ( and ) were hub genes and the KEGG enrichment analysis found that these genes such as and were considerably enriched in pathways such as MAPK signaling pathway, HTLV-I infection, and Hepatitis B. In addition, two genes ( and ) with a higher degree were found to be key regulators and play important roles in the transcriptional regulator network and drug-gene interactions, suggesting that these two genes were associated with SD development. and might be served as the potential targets for SD treatment.

摘要

本研究旨在确定与睡眠剥夺(SD)风险相关的潜在治疗靶点。从基因表达综合数据库(Gene Expression Omnibus database)中获取 GSE77393 数据集。通过功能分析和蛋白质-蛋白质相互作用(PPI)分析,从两个 SD 样本和对照样本中提取差异表达基因(DEGs)。此外,还进一步提取了具有相同功能的子模块网络,并对相应基因进行了功能富集分析。随后,还进行了转录调控分析和药物-基因相互作用,以鉴定与 SD 易感性相关的关键基因。总共筛选出 121 个 DEGs,包括 90 个上调的 DEGs 和 31 个下调的 DEGs,功能分析结果表明,上调的基因与学习或记忆以及对药物的反应有关,而下调的 DEGs 主要负责对 UV 的反应和细胞分化。此外,PPI 网络和子模块分析显示,许多关键基因(和)是枢纽基因,KEGG 富集分析发现这些基因如和在 MAPK 信号通路、HTLV-I 感染和乙型肝炎等途径中显著富集。此外,还发现两个具有较高度数的基因(和)是关键调节剂,在转录调控网络和药物-基因相互作用中发挥重要作用,表明这两个基因与 SD 的发展有关。和可能作为 SD 治疗的潜在靶点。

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