Pearson Talima, Barger Steven D, Lininger Monica, Wayment Heidi, Hepp Crystal, Villa Francisco, Tucker-Morgan Kara, Kyman Shari, Cabrera Melissa, Hurtado Kevin, Menard Ashley, Fulbright Kelly, Wood Colin, Mbegbu Mimi, Zambrano Yesenia, Fletcher Annette, Medina-Rodriguez Sarah, Manone Mark, Aguirre Amanda, Milner Trudie, Trotter Ii Robert T
Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, AZ, United States.
Center for Health Equity Research, Northern Arizona University, Flagstaff, AZ, United States.
JMIR Res Protoc. 2019 Sep 27;8(9):e14853. doi: 10.2196/14853.
Health care-associated Staphylococcus aureus infections are declining but remain common. Conversely, rates of community-associated infections have not decreased because of the inadequacy of public health mechanisms to control transmission in a community setting. Our long-term goal is to use risk-based information from empirical socio-cultural-biological evidence of carriage and transmission to inform intervention strategies that reduce S aureus transmission in the community. Broad differences in social interactions because of cultural affiliation, travel, and residency patterns may impact S aureus carriage and transmission, either as risk or as protective factors.
This study aims to (1) characterize S aureus carriage rates and compare circulating pathogen genotypes with those associated with disease isolated from local clinical specimens across resident groups and across Hispanic and non-Hispanic white ethnic groups and (2) evaluate social network relationships and social determinants of health-based risk factors for their impact on carriage and transmission of S aureus.
We combine sociocultural survey approaches to population health sampling with S aureus carriage and pathogen genomic analysis to infer transmission patterns. Whole genome sequences of S aureus from community and clinical sampling will be phylogenetically compared to determine if strains that cause disease (clinical samples) are representative of community genotypes. Phylogenetic comparisons of strains collected from participants within social groups can indicate possible transmission within the group. We can therefore combine transmission data with social determinants of health variables (socioeconomic status, health history, etc) and social network variables (both egocentric and relational) to determine the extent to which social relationships are associated with S aureus transmission.
We conducted a first year pilot test and feasibility test of survey and biological data collection and analytic procedures based on the original funded design for this project (#NIH U54MD012388). That design resulted in survey data collection from 336 groups and 1337 individuals. The protocol, described below, is a revision based on data assessment, new findings for statistical power analyses, and refined data monitoring procedures.
This study is designed to evaluate ethnic-specific prevalence of S aureus carriage in a US border community. The study will also examine the extent to which kin and nonkin social relationships are concordant with carriage prevalence in social groups. Genetic analysis of S aureus strains will further distinguish putative transmission pathways across social relationship contexts and inform our understanding of the correspondence of S aureus reservoirs across clinical and community settings. Basic community-engaged nonprobabilistic sampling procedures provide a rigorous framework for completion of this 5-year study of the social and cultural parameters of S aureus carriage and transmission.
与医疗保健相关的金黄色葡萄球菌感染正在减少,但仍然很常见。相反,社区相关感染的发生率并未下降,因为公共卫生机制在社区环境中控制传播的能力不足。我们的长期目标是利用基于风险的信息,这些信息来自于携带和传播的经验性社会文化生物学证据,为减少社区中金黄色葡萄球菌传播的干预策略提供依据。由于文化归属、旅行和居住模式导致的社会互动广泛差异,可能会影响金黄色葡萄球菌的携带和传播,无论是作为风险因素还是保护因素。
本研究旨在(1)描述金黄色葡萄球菌的携带率,并比较不同居民群体以及西班牙裔和非西班牙裔白人种族群体中循环病原体基因型与从当地临床标本中分离出的与疾病相关的基因型;(2)评估社会网络关系以及基于健康的风险因素的社会决定因素对金黄色葡萄球菌携带和传播的影响。
我们将针对人群健康抽样的社会文化调查方法与金黄色葡萄球菌携带情况及病原体基因组分析相结合,以推断传播模式。将对社区和临床样本中的金黄色葡萄球菌全基因组序列进行系统发育比较,以确定引起疾病的菌株(临床样本)是否代表社区基因型。对从社会群体中的参与者收集的菌株进行系统发育比较,可以表明该群体内可能的传播情况。因此,我们可以将传播数据与健康变量(社会经济地位、健康史等)的社会决定因素以及社会网络变量(自我中心和关系型)相结合,以确定社会关系与金黄色葡萄球菌传播相关的程度。
我们根据该项目最初获得资助的设计(#NIH U54MD012388),进行了第一年的试点测试以及调查和生物数据收集与分析程序的可行性测试。该设计导致从336个群体和1337个人收集了调查数据。以下所述的方案是基于数据评估、统计功效分析中的新发现以及完善的数据监测程序进行的修订。
本研究旨在评估美国边境社区中金黄色葡萄球菌携带的种族特异性患病率。该研究还将考察亲属和非亲属社会关系与社会群体中携带患病率的一致程度。对金黄色葡萄球菌菌株的基因分析将进一步区分不同社会关系背景下的假定传播途径,并增进我们对临床和社区环境中金黄色葡萄球菌储存库对应关系的理解。基本的社区参与式非概率抽样程序为完成这项为期5年的关于金黄色葡萄球菌携带和传播的社会文化参数研究提供了一个严格的框架。