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小分子 Yoda1 激活机械敏感 Piezo1 通道的机制。

A mechanism for the activation of the mechanosensitive Piezo1 channel by the small molecule Yoda1.

机构信息

College of Pharmacy, Western University of Health Sciences, 309 E. Second St, Pomona, CA, 91766, USA.

Graduate College of Biomedical Sciences, Western University of Health Sciences, 309 E. Second St, Pomona, CA, 91766, USA.

出版信息

Nat Commun. 2019 Oct 3;10(1):4503. doi: 10.1038/s41467-019-12501-1.

Abstract

Mechanosensitive Piezo1 and Piezo2 channels transduce various forms of mechanical forces into cellular signals that play vital roles in many important biological processes in vertebrate organisms. Besides mechanical forces, Piezo1 is selectively activated by micromolar concentrations of the small molecule Yoda1 through an unknown mechanism. Here, using a combination of all-atom molecular dynamics simulations, calcium imaging and electrophysiology, we identify an allosteric Yoda1 binding pocket located in the putative mechanosensory domain, approximately 40 Å away from the central pore. Our simulations further indicate that the presence of the agonist correlates with increased tension-induced motions of the Yoda1-bound subunit. Our results suggest a model wherein Yoda1 acts as a molecular wedge, facilitating force-induced conformational changes, effectively lowering the channel's mechanical threshold for activation. The identification of an allosteric agonist binding site in Piezo1 channels will pave the way for the rational design of future Piezo modulators with clinical value.

摘要

机械敏感型 Piezo1 和 Piezo2 通道将各种形式的机械力转化为细胞信号,这些信号在脊椎动物的许多重要生物学过程中起着至关重要的作用。除了机械力之外,Piezo1 还通过未知机制被小分子 Yoda1 的毫摩尔浓度选择性激活。在这里,我们使用全原子分子动力学模拟、钙成像和电生理学的组合,在假定的机械敏感域中鉴定出一个变构的 Yoda1 结合口袋,距离中央孔约 40 Å。我们的模拟进一步表明,激动剂的存在与 Yoda1 结合亚基的张力诱导运动增加相关。我们的结果表明,Yoda1 作为一种分子楔子,促进力诱导的构象变化,有效地降低了通道的机械激活阈值,这是一种模型。Piezo1 通道中变构激动剂结合位点的鉴定将为具有临床价值的未来 Piezo 调节剂的合理设计铺平道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/daf0/6776524/2d95d5e8ff23/41467_2019_12501_Fig1_HTML.jpg

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