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全外显子组测序在血液学中的十年。

A decade with whole exome sequencing in haematology.

机构信息

Hematology Pathology Research Laboratory, Research Unit for Hematology and Research Unit for Pathology, Odense University Hospital, University of Southern Denmark, Odense, Denmark.

MLL Munich Leukemia Laboratory GmbH, Munich, Germany.

出版信息

Br J Haematol. 2020 Feb;188(3):367-382. doi: 10.1111/bjh.16249. Epub 2019 Oct 10.

Abstract

The first decade of capture-based targeted whole exome sequencing (WES) has now passed, while the sequencing modality continues to find more widespread usage in clinical research laboratories and still offers an unprecedented diagnostic assay in terms of throughput, informational content and running costs. Until quite recently, WES has been out of reach for many clinicians and molecular biologists, and it still poses issues or is met with some reluctance with regards to cost versus benefit in terms of effective assay costs, hands-on laboratory work and data analysis bottlenecks. Although WES is used more than ever, it may also be argued that the usage is peaking and that new implementations, or relevance in its current state, will likely be leveling off during the following decade as the price on whole genome sequencing continues to drop. In this review, we focus on the past decade of targeted whole exome sequencing in malignant hematology. We thematically revisit some of the significant discoveries and niches that use next-generation sequencing, and we outline what and how WES has contributed to the field - from clonal hematopoiesis of the aging bone marrow to profiling malignancies down to the single cell.

摘要

基于捕获的靶向全外显子组测序(WES)的第一个十年已经过去,而测序技术在临床研究实验室中仍在继续得到更广泛的应用,并且在通量、信息含量和运行成本方面提供了前所未有的诊断检测方法。直到最近,WES 对许多临床医生和分子生物学家来说仍然遥不可及,而且在有效检测成本、实验室实际工作和数据分析瓶颈方面,它的成本效益仍然存在问题或存在一些抵触。尽管 WES 的使用比以往任何时候都多,但也有人认为,随着全基因组测序价格的持续下降,其使用可能已经达到峰值,未来十年新的实施或当前状态的相关性可能会趋于平稳。在这篇综述中,我们重点关注恶性血液病靶向全外显子组测序的过去十年。我们从主题上回顾了一些利用下一代测序的重要发现和利基,概述了 WES 如何从老化骨髓中的克隆性造血到单细胞水平对恶性肿瘤进行分析等方面为该领域做出了贡献。

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