Department of Biology, University of Ottawa, Ottawa, ON K1N 6N5, Canada.
Brain and Mind Research Institute, University of Ottawa, Ottawa, ON K1H 8M5, Canada.
Int J Mol Sci. 2019 Oct 29;20(21):5378. doi: 10.3390/ijms20215378.
Naked mole-rats are long-lived animals that show unusual resistance to hypoxia, cancer and ageing. Protein deimination is an irreversible post-translational modification caused by the peptidylarginine deiminase (PAD) family of enzymes, which convert arginine into citrulline in target proteins. Protein deimination can cause structural and functional protein changes, facilitating protein moonlighting, but also leading to neo-epitope generation and effects on gene regulation. Furthermore, PADs have been found to regulate cellular release of extracellular vesicles (EVs), which are lipid-vesicles released from cells as part of cellular communication. EVs carry protein and genetic cargo and are indicative biomarkers that can be isolated from most body fluids. This study was aimed at profiling deiminated proteins in plasma and EVs of naked mole-rat. Key immune and metabolic proteins were identified to be post-translationally deiminated, with 65 proteins specific for plasma, while 42 proteins were identified to be deiminated in EVs only. Using protein-protein interaction network analysis, deiminated plasma proteins were found to belong to KEEG (Kyoto Encyclopedia of Genes and Genomes) pathways of immunity, infection, cholesterol and drug metabolism, while deiminated proteins in EVs were also linked to KEEG pathways of HIF-1 signalling and glycolysis. The mole-rat EV profiles showed a poly-dispersed population of 50-300 nm, similar to observations of human plasma. Furthermore, the EVs were assessed for three key microRNAs involved in cancer, inflammation and hypoxia. The identification of post-translational deimination of critical immunological and metabolic markers contributes to the current understanding of protein moonlighting functions, via post-translational changes, in the longevity and cancer resistance of naked mole-rats.
裸鼹鼠是一种长寿动物,对缺氧、癌症和衰老表现出异常的抵抗力。蛋白质脱亚胺化是一种不可逆的翻译后修饰,由肽基精氨酸脱亚氨酶(PAD)家族的酶引起,该酶将精氨酸转化为靶蛋白中的瓜氨酸。蛋白质脱亚胺化可导致结构和功能蛋白的变化,促进蛋白质分子伴侣的作用,但也会导致新表位的产生和对基因调控的影响。此外,已经发现 PAD 可调节细胞外囊泡(EVs)的细胞释放,EVs 是作为细胞间通讯的一部分从细胞中释放的脂质囊泡。EVs 携带蛋白质和遗传物质,是可以从大多数体液中分离出来的指示性生物标志物。本研究旨在对裸鼹鼠血浆和 EV 中的脱亚胺化蛋白进行分析。鉴定出关键的免疫和代谢蛋白发生了翻译后脱亚胺化,其中 65 种蛋白为血浆所特有,而 42 种蛋白仅在 EV 中发生脱亚胺化。通过蛋白质-蛋白质相互作用网络分析,发现脱亚胺化的血浆蛋白属于 KEEG(京都基因与基因组百科全书)免疫、感染、胆固醇和药物代谢途径,而 EV 中的脱亚胺化蛋白也与 HIF-1 信号和糖酵解途径相关。裸鼹鼠 EV 图谱显示出 50-300nm 的多分散群体,类似于人类血浆的观察结果。此外,还评估了 EVs 中三种与癌症、炎症和缺氧相关的关键 microRNA。这些发现为关键免疫和代谢标志物的翻译后脱亚胺化提供了依据,这有助于理解裸鼹鼠的长寿和抗癌能力的蛋白质分子伴侣功能,即通过翻译后修饰实现。