Hamilton Trinity L, Bennett Annastacia C, Murugapiran Senthil K, Havig Jeff R
Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
mSystems. 2019 Nov 5;4(6):e00498-19. doi: 10.1128/mSystems.00498-19.
Extant anoxygenic phototrophs are taxonomically, physiologically, and metabolically diverse and include examples from all seven bacterial phyla with characterized phototrophic members. pH, temperature, and sulfide are known to constrain phototrophs, but how these factors dictate the distribution and activity of specific taxa of anoxygenic phototrophs has not been reported. Here, we hypothesized that within the known limits of pH, temperature, and sulfide, the distribution, abundance, and activity of specific anoxygenic phototrophic taxa would vary due to key differences in the physiology of these organisms. To test this hypothesis, we examined the distribution, abundance, and potential activity of anoxygenic phototrophs in filaments, microbial mats, and sediments across geochemical gradients in geothermal features of Yellowstone National Park, which ranged in pH from 2.2 to 9.4 and in temperature from 31.5°C to 71.0°C. Indeed, our data indicate putative aerobic anoxygenic phototrophs within the are more abundant at lower pH and lower temperature, while phototrophic are prevalent in circumneutral to alkaline springs. In contrast to previous studies, our data suggest sulfide is not a key determinant of anoxygenic phototrophic taxa. Finally, our data underscore a role for photoheterotrophy (or photomixotrophy) across geochemical gradients in terrestrial geothermal ecosystems. There is a long and rich history of literature on phototrophs in terrestrial geothermal springs. These studies have revealed sulfide, pH, and temperature are the main constraints on phototrophy. However, the taxonomic and physiological diversity of anoxygenic phototrophs suggests that, within these constraints, specific geochemical parameters determine the distribution and activity of individual anoxygenic phototrophic taxa. Here, we report the recovery of sequences affiliated with characterized anoxygenic phototrophs in sites that range in pH from 2 to 9 and in temperature from 31°C to 71°C. Transcript abundance indicates anoxygenic phototrophs are active across this temperature and pH range. Our data suggest sulfide is not a key determinant of anoxygenic phototrophic taxa and underscore a role for photoheterotrophy in terrestrial geothermal ecosystems. These data provide the framework for high-resolution sequencing and activity approaches to characterize the physiology of specific anoxygenic phototrophic taxa across a broad range of temperatures and pH.
现存的无氧光合生物在分类学、生理学和代谢方面具有多样性,包括来自所有七个具有光合营养成员特征的细菌门的例子。已知pH值、温度和硫化物会限制光合生物,但这些因素如何决定特定无氧光合生物类群的分布和活性尚未见报道。在此,我们假设在pH值、温度和硫化物的已知限制范围内,特定无氧光合生物类群的分布、丰度和活性会因这些生物生理学上的关键差异而有所不同。为了验证这一假设,我们研究了黄石国家公园地热特征中沿地球化学梯度的丝状菌、微生物垫和沉积物中无氧光合生物的分布、丰度和潜在活性,这些地热特征的pH值范围为2.2至9.4,温度范围为31.5°C至71.0°C。事实上,我们的数据表明,假定的需氧无氧光合生物在较低的pH值和较低温度下更为丰富,而光合生物在近中性至碱性泉水中较为普遍。与之前的研究不同,我们的数据表明硫化物不是无氧光合生物类群的关键决定因素。最后,我们的数据强调了光异养(或光合混合营养)在陆地地热生态系统地球化学梯度中的作用。关于陆地地热泉中光合生物的文献历史悠久且丰富。这些研究表明,硫化物、pH值和温度是光合作用的主要限制因素。然而,无氧光合生物的分类学和生理学多样性表明,在这些限制范围内,特定的地球化学参数决定了各个无氧光合生物类群的分布和活性。在此,我们报告了在pH值范围为2至9、温度范围为31°C至71°C的地点恢复的与已鉴定的无氧光合生物相关的序列。转录本丰度表明无氧光合生物在这个温度和pH值范围内具有活性。我们的数据表明硫化物不是无氧光合生物类群的关键决定因素,并强调了光异养在陆地地热生态系统中的作用。这些数据为高分辨率测序和活性方法提供了框架,以表征在广泛温度和pH值范围内特定无氧光合生物类群的生理学特征。