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6-溴-2-(4-溴苯基)咪唑并[1,2-a]吡啶的晶体结构、密度泛函理论计算、 Hirshfeld表面分析及能量框架研究

Crystal structure, DFT calculation, Hirshfeld surface analysis and energy framework study of 6-bromo-2-(4-bromo-phen-yl)imidazo[1,2-]pyridine.

作者信息

Khamees Hussien Ahmed, Chaluvaiah Kumara, El-Khatatneh Nasseem Ahmed, Swamynayaka Ananda, Chong Kwong Huey, Dasappa Jagadeesh Prasad, Madegowda Mahendra

机构信息

Department of Studies in Physics, Manasagangotri, University of Mysore, Mysuru 570 006, Karnataka, India.

Department of Chemistry, Mangalore University, Mangalagangothri, Mangaluru 574 199, Karnataka, India.

出版信息

Acta Crystallogr E Crystallogr Commun. 2019 Oct 3;75(Pt 11):1620-1626. doi: 10.1107/S2056989019013410. eCollection 2019 Nov 1.

Abstract

The title imidazo[1,2-] pyridine derivative, CHBrN, was synthesized a single-step reaction method. The title mol-ecule is planar, showing a dihedral angle of 0.62 (17)° between the phenyl and the imidazo[1,2-] pyridine rings. An intra-molecular C-H⋯N hydrogen bond with an (5) ring motif is present. In the crystal, a short H⋯H contact links adjacent mol-ecules into inversion-related dimers. The dimers are linked in turn by weak C-H⋯π and slipped π-π stacking inter-actions, forming layers parallel to (110). The layers are connected into a three-dimensional network by short Br⋯H contacts. Two-dimensional fingerprint plots and three-dimensional Hirshfeld surface analysis of the inter-molecular contacts reveal that the most important contributions for the crystal packing are from H⋯Br/Br⋯H (26.1%), H⋯H (21.7%), H⋯C/C⋯H (21.3%) and C⋯C (6.5%) inter-actions. Energy framework calculations suggest that the contacts formed between mol-ecules are largely dispersive in nature. Analysis of HOMO-LUMO energies from a DFT calculation reveals the pure π character of the aromatic rings with the highest electron density on the phenyl ring, and σ character of the electron density on the Br atoms. The HOMO-LUMO gap was found to be 4.343 eV.

摘要

标题化合物咪唑并[1,2 - ]吡啶衍生物CHBrN通过单步反应法合成。标题分子呈平面结构,苯环与咪唑并[1,2 - ]吡啶环之间的二面角为0.62 (17)°。存在一个具有(5)环模式的分子内C - H⋯N氢键。在晶体中,一个短的H⋯H接触将相邻分子连接成反演相关的二聚体。这些二聚体又通过弱的C - H⋯π和滑移π - π堆积相互作用连接,形成平行于(110)的层。这些层通过短的Br⋯H接触连接成三维网络。分子间接触的二维指纹图谱和三维 Hirshfeld 表面分析表明,晶体堆积中最重要的贡献来自H⋯Br/Br⋯H(26.1%)、H⋯H(21.7%)、H⋯C/C⋯H(21.3%)和C⋯C(6.5%)相互作用。能量框架计算表明分子间形成的接触在很大程度上具有色散性质。DFT计算的HOMO - LUMO能量分析揭示了芳环的纯π特性,苯环上电子密度最高,以及Br原子上电子密度的σ特性。发现HOMO - LUMO能隙为4.343 eV。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cffa/6829731/07bf64c2a325/e-75-01620-fig1.jpg

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