National Key Facility for Crop Genetic Resources and Genetic Improvement, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Rice Research Institute, Jiangxi Academy of Agricultural Sciences/ Rice National Engineering Laboratory, Nanchang 330200, China.
Int J Mol Sci. 2019 Nov 15;20(22):5741. doi: 10.3390/ijms20225741.
Foxtail millet (), which originated in China, has a strong tolerance to low nutrition stresses. However, the mechanism of foxtail millet tolerance to low-nitrogen stress is still unknown. In this study, the transcriptome of foxtail millet under low-nitrogen stress was systematically analyzed. Expression of 1891 genes was altered, including 1318 up-regulated genes and 573 down-regulated genes. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis revealed that 3% of these genes were involved in membrane transport and 5% were involved in redox processes. There were 74 total transcription factor (TF) genes in the DEGs (differentially expressed genes), and MYB-like transcription factors accounted for one-third (25) of the TF genes. We systematically analyzed the characteristics, expression patterns, chromosome locations, and protein structures of 25 MYB-like genes. The analysis of gene function showed that and rice overexpressing had better root development than WT under low-nitrogen stress. Moreover, EMSA results showed that protein could specifically bind MYB elements in the promoter region of , an auxin synthesis related gene and MYB3-TAR2 regulate pair conserved in rice and foxtail millet. These results suggested that can regulate root development by regulating plant root auxin synthesis under low-nitrogen conditions.
黍()原产于中国,对低营养胁迫具有很强的耐受性。然而,黍耐受低氮胁迫的机制尚不清楚。本研究系统分析了低氮胁迫下黍的转录组。1891 个基因的表达发生了改变,包括 1318 个上调基因和 573 个下调基因。KEGG(京都基因与基因组百科全书)分析显示,这些基因中有 3%参与膜转运,5%参与氧化还原过程。在差异表达基因(DEGs)中共有 74 个总转录因子(TF)基因,其中 MYB 样转录因子占 TF 基因的三分之一(25)。我们系统分析了 25 个 MYB 样基因的特征、表达模式、染色体位置和蛋白质结构。基因功能分析表明,和过表达 的水稻在低氮胁迫下的根发育比 WT 更好。此外,EMSA 结果表明,蛋白可以特异性结合生长素合成相关基因 和 MYB3-TAR2 保守对在水稻和黍中的启动子区域的 MYB 元件,调节植物根中生长素的合成。这些结果表明,在低氮条件下,通过调节植物根中生长素的合成,来调控根的发育。