Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.
Department of Biology, McGill University, Montreal, Quebec, Canada.
Proc Biol Sci. 2019 Nov 20;286(1915):20191409. doi: 10.1098/rspb.2019.1409.
Environmental DNA (eDNA) applications are transforming the standard of characterizing aquatic biodiversity via the presence, location and abundance of DNA collected from environmental samples. As eDNA studies use DNA fragments as a proxy for the presence of organisms, the ecological properties of the complex and dynamic environments from which eDNA is sampled need to be considered for accurate biological interpretation. In this review, we discuss the role that differing environments play on the major processes that eDNA undergoes between organism and collection, including shedding, decay and transport. We focus on a mechanistic understanding of these processes and highlight how decay and transport models are being developed towards more accurate and robust predictions of the fate of eDNA. We conclude with five recommendations for eDNA researchers and practitioners, to advance current best practices, as well as to support a future model of eDNA spatio-temporal persistence.
环境 DNA(eDNA) 的应用正在通过从环境样本中收集的 DNA 的存在、位置和丰度来改变水生生物多样性的特征标准。由于 eDNA 研究使用 DNA 片段作为生物体存在的替代物,因此需要考虑 eDNA 采样的复杂和动态环境的生态特性,以进行准确的生物学解释。在这篇综述中,我们讨论了不同环境在 eDNA 经历的从生物体到采集的主要过程中所起的作用,包括脱落、衰减和运输。我们专注于对这些过程的机制理解,并强调了如何开发衰减和运输模型,以更准确和稳健地预测 eDNA 的命运。最后,我们为 eDNA 研究人员和从业者提出了五条建议,以推进当前的最佳实践,并支持未来的 eDNA 时空持久性模型。