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分析克罗地亚的 HIV-1 多样性、原发性耐药性和传播网络。

Analysis of HIV-1 diversity, primary drug resistance and transmission networks in Croatia.

机构信息

University of Zagreb School of Medicine, Zagreb, 10000, Croatia.

University Hospital for Infectious Diseases "Dr. Fran Mihaljević", Zagreb, 10000, Croatia.

出版信息

Sci Rep. 2019 Nov 21;9(1):17307. doi: 10.1038/s41598-019-53520-8.

DOI:10.1038/s41598-019-53520-8
PMID:31754119
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6872562/
Abstract

Molecular epidemiology of HIV-1 infection in treatment-naive HIV-1 infected persons from Croatia was investigated. We included 403 persons, representing 92.4% of all HIV-positive individuals entering clinical care in Croatia in 2014-2017. Overall prevalence of transmitted drug resistance (TDR) was estimated at 16.4%. Resistance to nucleoside reverse transcriptase inhibitors (NRTIs), non-nucleoside RTI (NNRTIs) and protease inhibitors (PIs) was found in 11.4%, 6.7% and 2.5% of persons, respectively. Triple-class resistance was determined in 2.2% of individuals. In addition, a single case (1.0%) of resistance to integrase strand-transfer inhibitors (InSTIs) was found. Deep sequencing was performed on 48 randomly selected samples and detected additional TDR mutations in 6 cases. Phylogenetic inference showed that 347/403 sequences (86.1%) were part of transmission clusters and identified forward transmission of resistance in Croatia, even that of triple-class resistance. The largest TDR cluster of 53 persons with T215S was estimated to originate in the year 1992. Our data show a continuing need for pre-treatment HIV resistance testing in Croatia. Even though a low prevalence of resistance to InSTI was observed, surveillance of TDR to InSTI should be continued.

摘要

对来自克罗地亚的未经治疗的 HIV-1 感染者的 HIV-1 感染的分子流行病学进行了研究。我们纳入了 403 人,占 2014-2017 年期间进入克罗地亚临床护理的所有 HIV 阳性个体的 92.4%。总体传播耐药(TDR)的流行率估计为 16.4%。核苷逆转录酶抑制剂(NRTIs)、非核苷 RTIs(NNRTIs)和蛋白酶抑制剂(PIs)的耐药率分别为 11.4%、6.7%和 2.5%。三重耐药的比例为 2.2%。此外,还发现了 1 例(1.0%)对整合酶链转移抑制剂(InSTIs)的耐药。对 48 个随机选择的样本进行了深度测序,在 6 个病例中检测到了额外的 TDR 突变。系统发育推断表明,403 个序列中的 347 个(86.1%)是传播簇的一部分,表明克罗地亚存在耐药性的向前传播,甚至存在三重耐药性的传播。估计由 53 人组成的最大 TDR 簇携带 T215S,起源于 1992 年。我们的数据表明,克罗地亚仍然需要进行治疗前 HIV 耐药性检测。尽管观察到对 InSTI 的耐药率较低,但仍应继续监测对 InSTI 的 TDR。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53e1/6872562/9adcf64887ef/41598_2019_53520_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53e1/6872562/1292f803b142/41598_2019_53520_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53e1/6872562/9adcf64887ef/41598_2019_53520_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53e1/6872562/1292f803b142/41598_2019_53520_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53e1/6872562/9adcf64887ef/41598_2019_53520_Fig2_HTML.jpg

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