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放线菌次生代谢物的分子和生物技术方面。

Molecular and biotechnological aspects of secondary metabolites in actinobacteria.

机构信息

College of Horticulture and Forestry, Department of Social Science and Basic Sciences Neri, Hamirpur Dr YS Parmar University of Horticulture and Forestry, Nauni, Solan, HP, 177001, India.

University Centre for Research and Development, Chandigarh University, 140413, India.

出版信息

Microbiol Res. 2020 Jan;231:126374. doi: 10.1016/j.micres.2019.126374. Epub 2019 Nov 12.

Abstract

The ability to produce plethora of secondary metabolites and enzymes for pharmaceutical, agricultural and biotechnological applications make actinobacteria one of the most explored microbes among prokaryotes. The secondary metabolites and lytic enzymes of actinobacteria are known for their role in various physiological, cellular and biological processes including environmental sensing, mineral acquisition and recycling, and establishing social communication. In addition, the basic scaffold of secondary metabolties derived from actinobacteria is a source of inspiration for chemists. Recent development in "gene to metabolites" and "metabolites to gene" based omics technologies have played major role in revealing the prevalence of silent gene clusters in the genome of actinobacteria. Moreover, the development in precision-based genome editing tools and use of artificial gene operon for pathway engineering have emerged as a key player in activation of these silent/cryptic gene clusters for novel metabolites at large scale which were previously found to be poorly expressed and difficult to characterize in lab conditions. The access to diverse uncharacterized biosynthetic gene clusters of different types and the leverage of modern gene editing tools for modulated expression of the operons would contribute to novel product discovery and product diversification compared to traditional way of mining metabolites. Here, in review article, we have discussed the taxonomic status, genomic potential of actinobacteria for various secondary metabolites and role of genetic engineering to explore these microbes for human welfare.

摘要

能够产生丰富的次生代谢物和酶,用于医药、农业和生物技术应用,使得放线菌成为原核生物中最受探索的微生物之一。放线菌的次生代谢物和裂解酶以其在各种生理、细胞和生物过程中的作用而闻名,包括环境感应、矿物质获取和回收以及建立社会交流。此外,源自放线菌的次生代谢物的基本支架是化学家的灵感来源。基于“基因到代谢物”和“代谢物到基因”的组学技术的最新发展,在揭示放线菌基因组中沉默基因簇的普遍性方面发挥了重要作用。此外,基于精确的基因组编辑工具的发展和人工基因操纵子在途径工程中的应用,已成为激活这些沉默/隐匿基因簇以大规模生产新型代谢物的关键因素,这些代谢物以前在实验室条件下发现表达水平低且难以表征。获得不同类型的未表征生物合成基因簇的多样性,并利用现代基因编辑工具对操纵子进行调节表达,与传统的挖掘代谢物的方法相比,有助于进行新型产物的发现和多样化。在这篇综述文章中,我们讨论了放线菌的分类地位、基因组产生各种次生代谢物的潜力以及遗传工程的作用,以探索这些微生物造福人类。

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