• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

单胺氧化酶 A 催化苄胺分解的氢/氘动力学同位素效应的路径积分计算。

Path Integral Calculation of the Hydrogen/Deuterium Kinetic Isotope Effect in Monoamine Oxidase A-Catalyzed Decomposition of Benzylamine.

机构信息

Faculty of Chemistry, Jagiellonian University, 30-387 Kraków, Poland.

National Institute of Chemistry, SI-1000 Ljubljana, Slovenia.

出版信息

Molecules. 2019 Nov 28;24(23):4359. doi: 10.3390/molecules24234359.

DOI:10.3390/molecules24234359
PMID:31795294
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6930584/
Abstract

Monoamine oxidase A (MAO A) is a well-known enzyme responsible for the oxidative deamination of several important monoaminergic neurotransmitters. The rate-limiting step of amine decomposition is hydride anion transfer from the substrate α-CH2 group to the N5 atom of the flavin cofactor moiety. In this work, we focus on MAO A-catalyzed benzylamine decomposition in order to elucidate nuclear quantum effects through the calculation of the hydrogen/deuterium (H/D) kinetic isotope effect. The rate-limiting step of the reaction was simulated using a multiscale approach at the empirical valence bond (EVB) level. We applied path integral quantization using the quantum classical path method (QCP) for the substrate benzylamine as well as the MAO cofactor flavin adenine dinucleotide. The calculated H/D kinetic isotope effect of 6.5 ± 1.4 is in reasonable agreement with the available experimental values.

摘要

单胺氧化酶 A(MAO A)是一种众所周知的酶,负责氧化脱氨几种重要的单胺能神经递质。胺分解的限速步骤是从底物α-CH2 基团向黄素辅因子部分的 N5 原子转移氢阴离子。在这项工作中,我们专注于 MAO A 催化的苄胺分解,以通过计算氢/氘(H/D)动力学同位素效应来阐明核量子效应。使用经验价键(EVB)水平的多尺度方法模拟了反应的限速步骤。我们应用量子经典路径法(QCP)对底物苄胺和 MAO 辅因子黄素腺嘌呤二核苷酸进行路径积分量子化。计算得到的 H/D 动力学同位素效应为 6.5±1.4,与现有实验值吻合较好。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9d0/6930584/9d285ff0df83/molecules-24-04359-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9d0/6930584/9d285ff0df83/molecules-24-04359-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9d0/6930584/9d285ff0df83/molecules-24-04359-g001.jpg

相似文献

1
Path Integral Calculation of the Hydrogen/Deuterium Kinetic Isotope Effect in Monoamine Oxidase A-Catalyzed Decomposition of Benzylamine.单胺氧化酶 A 催化苄胺分解的氢/氘动力学同位素效应的路径积分计算。
Molecules. 2019 Nov 28;24(23):4359. doi: 10.3390/molecules24234359.
2
Path Integral Simulation of the H/D Kinetic Isotope Effect in Monoamine Oxidase B Catalyzed Decomposition of Dopamine.单胺氧化酶B催化多巴胺分解中氢/氘动力学同位素效应的路径积分模拟
J Phys Chem B. 2016 Apr 14;120(14):3488-92. doi: 10.1021/acs.jpcb.6b00894. Epub 2016 Mar 31.
3
Structure-activity relationships in the oxidation of para-substituted benzylamine analogues by recombinant human liver monoamine oxidase A.重组人肝脏单胺氧化酶A催化对取代苄胺类似物氧化反应中的构效关系
Biochemistry. 1999 Oct 12;38(41):13670-83. doi: 10.1021/bi990920y.
4
Structure-activity relationships in the oxidation of benzylamine analogues by bovine liver mitochondrial monoamine oxidase B.牛肝线粒体单胺氧化酶B对苄胺类似物氧化的构效关系
Biochemistry. 1994 Jun 14;33(23):7088-98. doi: 10.1021/bi00189a011.
5
Reaction mechanism of monoamine oxidase from QM/MM calculations.QM/MM 计算中单胺氧化酶的反应机制。
J Phys Chem B. 2013 Nov 21;117(46):14238-46. doi: 10.1021/jp4061522. Epub 2013 Nov 8.
6
²H kinetic isotope effects and pH dependence of catalysis as mechanistic probes of rat monoamine oxidase A: comparisons with the human enzyme.²H 动力学同位素效应和催化的 pH 依赖性作为大鼠单胺氧化酶 A 的机制探针:与人酶的比较。
Biochemistry. 2011 Sep 6;50(35):7710-7. doi: 10.1021/bi200951z. Epub 2011 Aug 16.
7
Influence of the environment on the oxidative deamination of p-substituted benzylamines in monoamine oxidase.环境对单胺氧化酶中对取代苄胺氧化脱氨基作用的影响。
J Phys Chem B. 2015 Mar 5;119(9):3678-86. doi: 10.1021/jp512470a. Epub 2015 Feb 24.
8
Three types of stereospecificity and the kinetic deuterium isotope effect in the oxidative deamination of dopamine as catalyzed by different amine oxidases.不同胺氧化酶催化多巴胺氧化脱氨反应中的三种立体特异性及动力学氘同位素效应
Biochem Cell Biol. 1988 Aug;66(8):853-61. doi: 10.1139/o88-097.
9
Multiscale simulation of monoamine oxidase catalyzed decomposition of phenylethylamine analogs.多尺度模拟单胺氧化酶催化苯乙胺类似物的分解。
Eur J Pharmacol. 2017 Dec 15;817:46-50. doi: 10.1016/j.ejphar.2017.05.061. Epub 2017 Jun 3.
10
A computational study on the amine-oxidation mechanism of monoamine oxidase: insight into the polar nucleophilic mechanism.单胺氧化酶胺氧化机制的计算研究:对极性亲核机制的洞察。
Org Biomol Chem. 2006 Feb 21;4(4):646-58. doi: 10.1039/b511350d. Epub 2006 Jan 23.

引用本文的文献

1
L-DOPA Autoxidation: An Empirical Valence Bond Simulation of the Reactive Step.L-DOPA 自动氧化:反应步骤的经验价键模拟。
J Phys Chem B. 2024 Sep 5;128(35):8355-8361. doi: 10.1021/acs.jpcb.4c03002. Epub 2024 Aug 24.
2
Computational Mechanistic Study of l-Aspartate Oxidase by ONIOM Method.采用ONIOM方法对L-天冬氨酸氧化酶进行的计算机理研究。
ACS Omega. 2023 May 25;8(22):19963-19968. doi: 10.1021/acsomega.3c01949. eCollection 2023 Jun 6.
3
Computational Analysis of the Nicotine Oxidoreductase Mechanism by the ONIOM Method.

本文引用的文献

1
Comparative Analysis of the Neurochemical Profile and MAO Inhibition Properties of N-(Furan-2-ylmethyl)-N-methylprop-2-yn-1-amine.N-(呋喃-2-基甲基)-N-甲基丙-2-炔-1-胺的神经化学特征及单胺氧化酶抑制特性的比较分析
ACS Chem Neurosci. 2017 May 17;8(5):1026-1035. doi: 10.1021/acschemneuro.6b00377. Epub 2016 Dec 30.
2
Improved Peptide and Protein Torsional Energetics with the OPLSAA Force Field.利用OPLSAA力场改进肽和蛋白质的扭转能量学
J Chem Theory Comput. 2015 Jul 14;11(7):3499-509. doi: 10.1021/acs.jctc.5b00356.
3
The Chemistry of Neurodegeneration: Kinetic Data and Their Implications.
采用ONIOM方法对尼古丁氧化还原酶机制进行的计算分析。
ACS Omega. 2021 Aug 18;6(34):22422-22428. doi: 10.1021/acsomega.1c03357. eCollection 2021 Aug 31.
神经退行性变的化学:动力学数据及其意义
Mol Neurobiol. 2016 Jul;53(5):3400-3415. doi: 10.1007/s12035-015-9284-1. Epub 2015 Jun 18.
4
Influence of the environment on the oxidative deamination of p-substituted benzylamines in monoamine oxidase.环境对单胺氧化酶中对取代苄胺氧化脱氨基作用的影响。
J Phys Chem B. 2015 Mar 5;119(9):3678-86. doi: 10.1021/jp512470a. Epub 2015 Feb 24.
5
Multiscale modeling of biological functions: from enzymes to molecular machines (Nobel Lecture).生物功能的多尺度建模:从酶到分子机器(诺贝尔演讲)
Angew Chem Int Ed Engl. 2014 Sep 15;53(38):10020-31. doi: 10.1002/anie.201403689. Epub 2014 Jul 24.
6
Update on the pharmacology of selective inhibitors of MAO-A and MAO-B: focus on modulation of CNS monoamine neurotransmitter release.单胺氧化酶-A 和单胺氧化酶-B 选择性抑制剂的药理学更新:重点调节中枢神经系统单胺神经递质释放。
Pharmacol Ther. 2014 Aug;143(2):133-52. doi: 10.1016/j.pharmthera.2014.02.010. Epub 2014 Mar 5.
7
Reaction mechanism of monoamine oxidase from QM/MM calculations.QM/MM 计算中单胺氧化酶的反应机制。
J Phys Chem B. 2013 Nov 21;117(46):14238-46. doi: 10.1021/jp4061522. Epub 2013 Nov 8.
8
Heavy drugs draw heavy interest from pharma backers.重磅药物吸引了制药行业支持者的浓厚兴趣。
Nat Med. 2013 Jun;19(6):656. doi: 10.1038/nm0613-656.
9
Hydrogen peroxide produced by mitochondrial monoamine oxidase catalysis: biological implications.线粒体单胺氧化酶催化产生的过氧化氢:生物学意义。
Curr Pharm Des. 2014;20(2):155-60. doi: 10.2174/13816128113190990406.
10
Combined quantum mechanics/molecular mechanics (QM/MM) methods in computational enzymology.计算酶学中的量子力学/分子力学(QM/MM)联合方法。
Biochemistry. 2013 Apr 23;52(16):2708-28. doi: 10.1021/bi400215w. Epub 2013 Apr 12.