Faculty of Chemistry , University of Gdańsk , Wita Stwosza 63 , 80-308 Gdańsk , Poland.
J Phys Chem A. 2020 Jan 23;124(3):538-551. doi: 10.1021/acs.jpca.9b10319. Epub 2020 Jan 8.
Pyridine, its N-oxide, and their derivatives are exciting classes of organic bases. These compounds show widespread biological activity, and they are often used in synthesis. In this work results on theoretical calculations of acid dissociation constants as p of pyridine, its -oxide, and their derivatives were done based on the thermodynamic cycle in water and acetonitrile. Additionally, gas-phase basicity (GB) and proton affinity (PA) values were computed for systems studied. All p values were obtained using B3LYP, M06-2X, and G4MP2 methods in the gas phase, which were combined with the PCM model calculations (at the Hartree-Fock method) and with the use of four different scale factors alpha. Theoretical GB, PA, and p values were then compared with the available experimental ones. Results obtained from B3LYP and M06-2X methods are quite similar and compatible with experimental ones in terms of quality with correlation coefficients values higher than 0.9, whereas results received from G4MP2 deviate strongly. The calculated p values are highly sensitive to the scale factors alpha used in the computational procedure. Root-mean-square deviations (RMSD) between both theoretically and experimentally available p values of systems studied were also computed. The RMSD values are lower than 0.8 for the best results, suggesting that the theoretical model presented in this work is promising for applications for p calculations of different classes of compounds.
吡啶、其 N-氧化物及其衍生物是一类令人兴奋的有机碱。这些化合物表现出广泛的生物活性,并且常用于合成中。在这项工作中,基于在水和乙腈中的热力学循环,对吡啶、其 N-氧化物及其衍生物的酸离解常数 p 值进行了理论计算。此外,还计算了所研究体系的气相碱性 (GB) 和质子亲和能 (PA) 值。所有 p 值均在气相中使用 B3LYP、M06-2X 和 G4MP2 方法获得,这些方法与 PCM 模型计算(在 Hartree-Fock 方法上)相结合,并使用了四个不同的标度因子 alpha。然后将理论上的 GB、PA 和 p 值与可用的实验值进行比较。B3LYP 和 M06-2X 方法得到的结果非常相似,并且在质量方面与实验结果兼容,相关系数值高于 0.9,而 G4MP2 得到的结果则强烈偏离。计算出的 p 值对计算过程中使用的标度因子 alpha 非常敏感。还计算了研究体系的理论和实验可获得的 p 值之间的均方根偏差 (RMSD)。对于最佳结果,RMSD 值低于 0.8,这表明本文提出的理论模型在不同类化合物的 p 值计算中具有应用前景。