Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, UNESP-Universidade Estadual Paulista, Jaboticabal 14884-900, Brazil.
Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, São Bernardo do Campo 09606-070, Brazil.
Int J Mol Sci. 2019 Dec 18;21(1):3. doi: 10.3390/ijms21010003.
belongs to Lentibulariaceae, a widespread family of carnivorous plants that possess ultra-small and highly dynamic nuclear genomes. It has been shown that the Lentibulariaceae genomes have been shaped by transposable elements expansion and loss, and multiple rounds of whole-genome duplications (WGD), making the family a platform for evolutionary and comparative genomics studies. To explore the evolution of , we estimated the chromosome number and genome size, as well as sequenced the terrestrial bladderwort (2 = 40, 1C = 317.1-Mpb). Here, we report a high quality 304 Mb draft genome, with a scaffold NG50 of 466-Kb, a BUSCO completeness of 87.8%, and 42,582 predicted genes. Compared to the smaller and aquatic genome (101 Mb) that has a 32% repetitive sequence, the genome is highly repetitive (56%). The structural differences between the two genomes are the result of distinct fractionation and rearrangements after WGD, and massive proliferation of LTR-retrotransposons. Moreover, GO enrichment analyses suggest an ongoing gene birth-death-innovation process occurring among the tandem duplicated genes, shaping the evolution of carnivory-associated functions. We also identified unique patterns of developmentally related genes that support the terrestrial life-form and body plan of . Collectively, our results provided additional insights into the evolution of the plastic and specialized Lentibulariaceae genomes.
属于狸藻科,这是一个广泛分布的食虫植物科,拥有超小且高度动态的核基因组。已经表明,狸藻科的基因组受到转座元件扩张和丢失以及多轮全基因组复制(WGD)的影响,这使得该科成为进化和比较基因组学研究的平台。为了探索的进化,我们估计了染色体数目和基因组大小,并对陆生狸藻进行了测序(2 = 40,1C = 317.1-Mpb)。在这里,我们报告了一个高质量的 304 Mb 草图基因组,其支架 NG50 为 466-Kb,BUSCO 完整性为 87.8%,预测基因 42,582 个。与较小的水生基因组(101 Mb)相比,其重复序列为 32%,基因组高度重复(56%)。两个基因组之间的结构差异是 WGD 后明显的分离和重排以及 LTR-反转录转座子大量增殖的结果。此外,GO 富集分析表明,串联重复基因之间存在持续的基因诞生-死亡-创新过程,塑造了肉食相关功能的进化。我们还鉴定了与发育相关的基因的独特模式,这些基因支持的陆地生活形式和身体计划。总的来说,我们的研究结果为可塑性和特化的狸藻科基因组的进化提供了更多的见解。