The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, Jiangsu, China.
Center for Synthetic Biochemistry, Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technologies, Shenzhen, China.
Crit Rev Biotechnol. 2020 Mar;40(2):180-198. doi: 10.1080/07388551.2019.1709798. Epub 2020 Jan 6.
Filamentous fungi comprise an abundance of gene clusters that encode high-value metabolites, whereas affluent gene clusters remain silent during laboratory conditions. Complex cellular metabolism further limits these metabolite yields. Therefore, diverse strategies such as genetic engineering and chemical mutagenesis have been developed to activate these cryptic pathways and improve metabolite productivity. However, lower efficiencies of gene modifications and screen tools delayed the above processes. To address the above issues, this review describes an alternative design-construction evaluation optimization (DCEO) approach. The DCEO tool provides theoretical and practical principles to identify potential pathways, modify endogenous pathways, integrate exogenous pathways, and exploit novel pathways for their diverse metabolites and desirable productivities. This DCEO method also offers different tactics to balance the cellular metabolisms, facilitate the genetic engineering, and exploit the scalable metabolites in filamentous fungi.
丝状真菌包含大量编码高价值代谢物的基因簇,而丰富的基因簇在实验室条件下保持沉默。复杂的细胞代谢进一步限制了这些代谢物的产量。因此,已经开发了多种策略,如遗传工程和化学诱变,以激活这些隐藏途径并提高代谢产物的产量。然而,基因修饰和筛选工具的效率较低,这一过程因此受到了延迟。为了解决上述问题,本综述描述了一种替代的设计-构建-评估-优化(DCEO)方法。DCEO 工具提供了理论和实践原则,以识别潜在途径、修饰内源性途径、整合外源性途径,并利用新颖途径获得多样化的代谢物和理想的产量。这种 DCEO 方法还提供了不同的策略来平衡细胞代谢、促进基因工程,并利用丝状真菌中的可扩展代谢物。