Farrer Emily C, Porazinska Dorota L, Spasojevic Marko J, King Andrew J, Bueno de Mesquita Clifton P, Sartwell Samuel A, Smith Jane G, White Caitlin T, Schmidt Steven K, Suding Katharine N
Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA, United States.
Institute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO, United States.
Front Microbiol. 2019 Dec 18;10:2887. doi: 10.3389/fmicb.2019.02887. eCollection 2019.
While it is well established that microbial composition and diversity shift along environmental gradients, how interactions among microbes change is poorly understood. Here, we tested how community structure and species interactions among diverse groups of soil microbes (bacteria, fungi, non-fungal eukaryotes) change across a fundamental ecological gradient, succession. Our study system is a high-elevation alpine ecosystem that exhibits variability in successional stage due to topography and harsh environmental conditions. We used hierarchical Bayesian joint distribution modeling to remove the influence of environmental covariates on species distributions and generated interaction networks using the residual species-to-species variance-covariance matrix. We hypothesized that as ecological succession proceeds, diversity will increase, species composition will change, and soil microbial networks will become more complex. As expected, we found that diversity of most taxonomic groups increased over succession, and species composition changed considerably. Interestingly, and contrary to our hypothesis, interaction networks became less complex over succession (fewer interactions per taxon). Interactions between photosynthetic microbes and any other organism became less frequent over the gradient, whereas interactions between plants or soil microfauna and any other organism were more abundant in late succession. Results demonstrate that patterns in diversity and composition do not necessarily relate to patterns in network complexity and suggest that network analyses provide new insight into the ecology of highly diverse, microscopic communities.
虽然微生物组成和多样性会随着环境梯度而变化,这一点已得到充分证实,但微生物之间的相互作用如何变化却鲜为人知。在这里,我们测试了不同土壤微生物群体(细菌、真菌、非真菌真核生物)之间的群落结构和物种相互作用如何在一个基本的生态梯度——演替过程中发生变化。我们的研究系统是一个高海拔高山生态系统,由于地形和恶劣的环境条件,该系统在演替阶段表现出变异性。我们使用分层贝叶斯联合分布模型来消除环境协变量对物种分布的影响,并使用残差物种间方差协方差矩阵生成相互作用网络。我们假设随着生态演替的进行,多样性会增加,物种组成会发生变化,并且土壤微生物网络会变得更加复杂。正如预期的那样,我们发现大多数分类群的多样性在演替过程中增加,物种组成也发生了相当大的变化。有趣的是,与我们的假设相反,相互作用网络在演替过程中变得不那么复杂(每个分类单元的相互作用减少)。在这个梯度上,光合微生物与任何其他生物体之间的相互作用变得不那么频繁,而植物或土壤小型动物与任何其他生物体之间的相互作用在演替后期更为丰富。结果表明,多样性和组成模式不一定与网络复杂性模式相关,并表明网络分析为高度多样的微观群落生态学提供了新的见解。