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一种新型乙型肝炎病毒(HBV)抑制剂的晶体结构、 Hirshfeld分析及分子对接研究:5-甲基-1,1-二氧代-2-{[5-(戊-3-基)-1,2,4-恶二唑-3-基]甲基}-2H-1,2,6-噻二嗪-4-羧酸乙酯

Crystal structure, Hirshfeld analysis and a mol-ecular docking study of a new inhibitor of the Hepatitis B virus (HBV): ethyl 5-methyl-1,1-dioxo-2-{[5-(pentan-3-yl)-1,2,4-oxa-diazol-3-yl]meth-yl}-2-1,2,6-thia-diazine-4-carboxyl-ate.

作者信息

Ivachtchenko Alexandre V, Kovalenko Sergiy M, Kravchenko Dmitry V, Mitkin Oleg D, Ivanov Vladimir V, Langer Thierry

机构信息

ChemRar Research and Development Institute, 7 Nobel St, Innovation Center, Skolkovo Territory, Moscow, 143026, Russian Federation.

V.N. Karazin Kharkiv National University, 4 Svobody Sq., Kharkiv, 61077, Ukraine.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):12-17. doi: 10.1107/S2056989019015986.

Abstract

The title compound, CHNOS, was prepared alkyl-ation of 3-(chloro-meth-yl)-5-(pentan-3-yl)-1,2,4-oxa-diazole in anhydrous dioxane in the presence of tri-ethyl-amine. The thia-diazine ring has an envelope conformation with the S atom displaced by 0.4883 (6) Å from the mean plane through the other five atoms. The planar 1,2,4-oxa-diazole ring is inclined to the mean plane of the thia-diazine ring by 77.45 (11)°. In the crystal, mol-ecules are linked by C-H⋯N hydrogen bonds, forming chains propagating along the axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots have been used to analyse the inter-molecular contacts present in the crystal. Mol-ecular docking studies were use to evaluate the title compound as a potential system that inter-acts effectively with the capsid of the Hepatitis B virus (HBV), supported by an experimental HBV replication model.

摘要

标题化合物CHNOS是通过在无水二氧六环中,在三乙胺存在下使3-(氯甲基)-5-(戊-3-基)-1,2,4-恶二唑进行烷基化反应制备得到的。噻二嗪环具有信封式构象,硫原子偏离通过其他五个原子的平均平面0.4883(6)Å。平面的1,2,4-恶二唑环与噻二嗪环的平均平面倾斜77.45(11)°。在晶体中,分子通过C-H⋯N氢键相连,形成沿轴方向延伸的链。使用 Hirshfeld 表面分析和二维指纹图谱来分析晶体中存在的分子间相互作用。通过实验性乙肝病毒(HBV)复制模型支持,利用分子对接研究来评估标题化合物作为一种能与乙肝病毒(HBV)衣壳有效相互作用的潜在体系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b5d/6944089/c08edbbc47ec/e-76-00012-fig1.jpg

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