• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

1-苄基-3-[(1-苄基-1H-1,2,3-三唑-5-基)甲基]-2,3-二氢-1H-1,3-苯并二唑-2-酮一水合物的晶体结构、 Hirshfeld表面分析和密度泛函理论研究

Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1-1,2,3-triazol-5-yl)meth-yl]-2,3-di-hydro-1-1,3-benzo-diazol-2-one monohydrate.

作者信息

Saber Asmaa, Sebbar Nada Kheira, Hökelek Tuncer, Labd Taha Mohamed, Mague Joel T, Hamou Ahabchane Noureddine, Essassi El Mokhtar

机构信息

Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco.

Laboratoire de Chimie Appliquée et Environnement, Equipe de Chimie Bioorganique Appliquée, Faculté des Sciences, Université Ibn Zohr, Agadir, Morocco.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):95-101. doi: 10.1107/S2056989019016876.

DOI:10.1107/S2056989019016876
PMID:31921460
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6944078/
Abstract

In the title mol-ecule, CHNO·HO, the di-hydro-benzo-diazole moiety is not quite planar, while the whole mol-ecule adopts a U-shaped conformation in which there is a close approach of the two benzyl groups. In the crystal, chains of alternating mol-ecules and lattice water extending along [201] are formed by O-H⋯O and O-H⋯N (UncoordW = uncoordinated water, Dhyr = di-hydro and Trz = triazole) hydrogen bonds. The chains are connected into layers parallel to (010) by C-H⋯O hydrogen bonds with the di-hydro-benzo-diazole units in adjacent layers inter-calating to form head-to-tail π-stacking [centroid-to-centroid distance = 3.5694 (11) Å] inter-actions between them, which generates the overall three-dimensional structure. Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯H (52.1%), H⋯C/C⋯H (23.8%) and O⋯H/H⋯O (11.2%) inter-actions. Hydrogen-bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Density functional theory (DFT) optimized structures at the B3LYP/ 6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap.

摘要

在标题分子CHNO·HO中,二氢苯并二唑部分并非完全平面,而整个分子呈U形构象,其中两个苄基相互靠近。在晶体中,沿着[201]方向延伸的由交替分子和晶格水组成的链通过O—H⋯O和O—H⋯N(UncoordW = 未配位水,Dhyr = 二氢,Trz = 三唑)氢键形成。这些链通过C—H⋯O氢键连接成平行于(010)的层,相邻层中的二氢苯并二唑单元相互嵌入,在它们之间形成头对头的π堆积[质心到质心距离 = 3.5694 (11) Å]相互作用,从而产生整体三维结构。 Hirshfeld表面分析表明,晶体堆积中最重要的贡献来自H⋯H(52.1%)、H⋯C/C⋯H(23.8%)和O⋯H/H⋯O(11.2%)相互作用。氢键和范德华相互作用是晶体堆积中的主要相互作用。将密度泛函理论(DFT)在B3LYP/6 - 311 G(d,p)水平优化的结构与实验测定的固态分子结构进行比较。阐明了最高占据分子轨道-最低未占据分子轨道(HOMO-LUMO)行为以确定能隙。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/a753b31642bb/e-76-00095-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/c44ec0f46630/e-76-00095-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/3912bf189d3e/e-76-00095-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/bf62fb8d8452/e-76-00095-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/aaf9b23842b6/e-76-00095-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/0588b8f2d6b7/e-76-00095-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/b77fd8f50457/e-76-00095-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/136da704a5ab/e-76-00095-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/a753b31642bb/e-76-00095-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/c44ec0f46630/e-76-00095-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/3912bf189d3e/e-76-00095-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/bf62fb8d8452/e-76-00095-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/aaf9b23842b6/e-76-00095-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/0588b8f2d6b7/e-76-00095-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/b77fd8f50457/e-76-00095-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/136da704a5ab/e-76-00095-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51cf/6944078/a753b31642bb/e-76-00095-fig8.jpg

相似文献

1
Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1-1,2,3-triazol-5-yl)meth-yl]-2,3-di-hydro-1-1,3-benzo-diazol-2-one monohydrate.1-苄基-3-[(1-苄基-1H-1,2,3-三唑-5-基)甲基]-2,3-二氢-1H-1,3-苯并二唑-2-酮一水合物的晶体结构、 Hirshfeld表面分析和密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 1;76(Pt 1):95-101. doi: 10.1107/S2056989019016876.
2
Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-di-hydro-1-1,3-benzo-diazol-2-one.1-甲基-3-(丙-2-炔-1-基)-2,3-二氢-1H-1,3-苯并二唑-2-酮的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 Nov 29;75(Pt 12):1940-1946. doi: 10.1107/S2056989019015779. eCollection 2019 Dec 1.
3
Crystal structure, Hirshfeld surface analysis, inter-action energy and DFT studies of (2)-2-(2,4-di-chloro-benzyl-idene)-4-nonyl-3,4-di-hydro-2-1,4-benzo-thia-zin-3-one.(2)-2-(2,4-二氯亚苄基)-4-壬基-3,4-二氢-2H-1,4-苯并噻嗪-3-酮的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2020 Jan 31;76(Pt 2):281-287. doi: 10.1107/S2056989020001036. eCollection 2020 Feb 1.
4
Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of (2)-4-benzyl-2-(2,4-di-chloro-benzyl-idene)-2-1,4-benzo-thia-zin-3(4)-one.(2)-4-苄基-2-(2,4-二氯亚苄基)-2,1,4-苯并噻嗪-3(4)-酮的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 Oct 22;75(Pt 11):1650-1656. doi: 10.1107/S2056989019013586. eCollection 2019 Nov 1.
5
Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of 3-{(2)-2-[(2,4-di-chloro-phen-yl)methyl-idene]-3-oxo-3,4-di-hydro-2-1,4-benzo-thia-zin-4-yl}propane-nitrile.3-{(2)-2-[(2,4-二氯苯基)亚甲基]-3-氧代-3,4-二氢-2H-1,4-苯并噻嗪-4-基}丙腈的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 May 3;75(Pt 6):721-727. doi: 10.1107/S2056989019005966. eCollection 2019 Jun 1.
6
Crystal structure, Hirshfeld surface analysis and DFT study of (2)-2-(2,4-di-chloro-benzyl-idene)-4-[2-(2-oxo-1,3-oxazolidin-3-yl)eth-yl]-3,4-di-hydro-2-1,4-benzo-thia-zin-3-one.(2)-2-(2,4-二氯亚苄基)-4-[2-(2-氧代-1,3-恶唑烷-3-基)乙基]-3,4-二氢-2H-1,4-苯并噻嗪-3-酮的晶体结构、 Hirshfeld表面分析及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 Apr 9;75(Pt 5):593-599. doi: 10.1107/S2056989019004250. eCollection 2019 May 1.
7
Crystal structure, Hirshfeld surface analysis and inter-action energy, DFT and anti-bacterial activity studies of ethyl 2-[(2)-2-(2-chloro-benzyl-idene)-3-oxo-3,4-di-hydro-2-1,4-benzo-thia-zin-4-yl]acetate.2-[(2)-2-(2-氯亚苄基)-3-氧代-3,4-二氢-2H-1,4-苯并噻嗪-4-基]乙酸乙酯的晶体结构、 Hirshfeld表面分析及相互作用能、密度泛函理论研究与抗菌活性研究
Acta Crystallogr E Crystallogr Commun. 2020 Apr 7;76(Pt 5):629-636. doi: 10.1107/S2056989020004119. eCollection 2020 May 1.
8
Crystal structure, Hirshfeld surface analysis and DFT study of (2)-2-(4-fluoro-benzyl-idene)-4-(prop-2-yn-1-yl)-3,4-di-hydro-2-1,4-benzo-thia-zin-3-one.(2)-2-(4-氟亚苄基)-4-(丙-2-炔-1-基)-3,4-二氢-2H-1,4-苯并噻嗪-3-酮的晶体结构、 Hirshfeld表面分析和密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 Feb 22;75(Pt 3):372-377. doi: 10.1107/S2056989019002354. eCollection 2019 Mar 1.
9
Crystal structure and Hirshfeld surface analysis of ethyl 2-{4-[(3-methyl-2-oxo-1,2-di-hydro-quinoxalin-1-yl)meth-yl]-1-1,2,3-triazol-1-yl}acetate.2-{4-[(3-甲基-2-氧代-1,2-二氢喹喔啉-1-基)甲基]-1H-1,2,3-三唑-1-基}乙酸乙酯的晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2018 Oct 23;74(Pt 11):1648-1652. doi: 10.1107/S2056989018014561. eCollection 2018 Nov 1.
10
Crystal structure and Hirshfeld surface analysis of 1-benzyl-3-(prop-2-yn-1-yl)-2,3-di-hydro-1-1,3-benzo-diazol-2-one.1-苄基-3-(丙-2-炔-1-基)-2,3-二氢-1H-1,3-苯并二唑-2-酮的晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2018 Nov 22;74(Pt 12):1842-1846. doi: 10.1107/S2056989018016298. eCollection 2018 Dec 1.

引用本文的文献

1
Crystal structure, Hirshfeld surface analysis and inter-action energy calculation of 1-decyl-2,3-di-hydro-1-benzimidazol-2-one.1-癸基-2,3-二氢-1-苯并咪唑-2-酮的晶体结构、 Hirshfeld表面分析及相互作用能计算
Acta Crystallogr E Crystallogr Commun. 2021 Apr 27;77(Pt 5):559-563. doi: 10.1107/S2056989021004291. eCollection 2021 May 1.

本文引用的文献

1
Crystal structure and Hirshfeld surface analysis of 1-benzyl-3-(prop-2-yn-1-yl)-2,3-di-hydro-1-1,3-benzo-diazol-2-one.1-苄基-3-(丙-2-炔-1-基)-2,3-二氢-1H-1,3-苯并二唑-2-酮的晶体结构与 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2018 Nov 22;74(Pt 12):1842-1846. doi: 10.1107/S2056989018016298. eCollection 2018 Dec 1.
2
Crystal structure and Hirshfeld surface analysis of 1-{[2-oxo-3-(prop-1-en-2-yl)-2,3-di-hydro-1-1,3-benzo-diazol-1-yl]meth-yl}-3-(prop-1-en-2-yl)-2,3-di-hydro-1-1,3-benzo-diazol-2-one.1-{[2-氧代-3-(1-丙烯-2-基)-2,3-二氢-1H-1,3-苯并二氮杂卓-1-基]甲基}-3-(1-丙烯-2-基)-2,3-二氢-1H-1,3-苯并二氮杂卓-2-酮的晶体结构和 Hirshfeld 表面分析
Acta Crystallogr E Crystallogr Commun. 2018 Nov 9;74(Pt 12):1746-1750. doi: 10.1107/S2056989018015219. eCollection 2018 Dec 1.
3
Crystal structure of 5-chloro-1,3-bis-[2-(2-oxo-1,3-oxazolidin-3-yl)eth-yl]-1H-benz-imidazol-2(3H)-one.5-氯-1,3-双-[2-(2-氧代-1,3-恶唑烷-3-基)乙基]-1H-苯并咪唑-2(3H)-酮的晶体结构
Acta Crystallogr E Crystallogr Commun. 2015 Sep 12;71(Pt 10):o735-6. doi: 10.1107/S2056989015016102. eCollection 2015 Oct 1.
4
Crystal structure, Hirshfeld surfaces and DFT computation of NLO active (2E)-2-(ethoxycarbonyl)-3-[(1-methoxy-1-oxo-3-phenylpropan-2-yl)amino] prop-2-enoic acid.NLO活性的(2E)-2-(乙氧羰基)-3-[(1-甲氧基-1-氧代-3-苯基丙-2-基)氨基]丙烯酸的晶体结构、 Hirshfeld表面和DFT计算
Spectrochim Acta A Mol Biomol Spectrosc. 2016 Jan 15;153:625-36. doi: 10.1016/j.saa.2015.09.002. Epub 2015 Sep 6.
5
Quantitative analysis of intermolecular interactions in orthorhombic rubrene.正交并五苯中分子间相互作用的定量分析。
IUCrJ. 2015 Aug 14;2(Pt 5):563-74. doi: 10.1107/S2052252515012130. eCollection 2015 Sep 1.
6
Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination.用于单晶结构测定的银和钼微焦点X射线源的比较。
J Appl Crystallogr. 2015 Jan 30;48(Pt 1):3-10. doi: 10.1107/S1600576714022985. eCollection 2015 Feb 1.
7
Benzimidazole: an emerging scaffold for analgesic and anti-inflammatory agents.苯并咪唑:一种新兴的用于镇痛和抗炎药物的支架。
Eur J Med Chem. 2014 Apr 9;76:494-505. doi: 10.1016/j.ejmech.2014.01.030. Epub 2014 Feb 18.
8
1-(4-Methyl-benz-yl)-1H-benzimidazol-2(3H)-one.1-(4-甲基-苄基)-1H-苯并咪唑-2(3H)-酮
Acta Crystallogr Sect E Struct Rep Online. 2013 Jan 1;69(Pt 1):o122. doi: 10.1107/S1600536812050726. Epub 2012 Dec 22.
9
1-Octyl-1H-benzimidazol-2(3H)-one.1-辛基-1H-苯并咪唑-2(3H)-酮
Acta Crystallogr Sect E Struct Rep Online. 2012 May 1;68(Pt 5):o1276. doi: 10.1107/S1600536812013384. Epub 2012 Apr 4.
10
1,3-Bis[2-(2-oxo-1,3-oxazolidin-3-yl)eth-yl]-1H-benzimidazol-2(3H)-one.1,3-双[2-(2-氧代-1,3-恶唑烷-3-基)乙基]-1H-苯并咪唑-2(3H)-酮
Acta Crystallogr Sect E Struct Rep Online. 2011 Jan 12;67(Pt 2):o362-3. doi: 10.1107/S1600536810052141.