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揭示陆生等足目动物的抗菌肽武器库:聚焦 Armadillidins,一种新的甲壳动物 AMP 家族。

Shedding Light on the Antimicrobial Peptide Arsenal of Terrestrial Isopods: Focus on Armadillidins, a New Crustacean AMP Family.

机构信息

Laboratoire Ecologie et Biologie des Interactions, UMR CNRS 7267, Université de Poitiers, 86073 Poitiers, France.

出版信息

Genes (Basel). 2020 Jan 14;11(1):93. doi: 10.3390/genes11010093.

DOI:10.3390/genes11010093
PMID:31947541
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7017220/
Abstract

In crustaceans, antimicrobial peptides (AMPs) are clustered into four major groups according to their amino acid composition and structure: (1) single-domain peptides containing cysteine residues such as nti-lipopolysaccharide-factor (ALF), (2) multi-domain or chimeric AMPs such as crustins, (3) non-conventional AMPs, and (4) linear single-domain AMPs. The majority of AMPs has been described in commercially exploited crustaceans, particularly decapods living in aquatic environments (crab, shrimp, lobster, and crayfish). Here, we aimed at establishing the AMPs repertoire of terrestrial isopods (Oniscidea), an original suborder of crustaceans adapted to life outside of the aquatic environment. Using transcriptomic data from 21 species, we identified 110 ALF and 73 crustin sequences. We also characterized the full-length sequence of armadillidins from 17 species, similar to the AMP previously described in the terrestrial isopod . Furthermore, we tested the antimicrobial activity of three armadillidin peptides characterized from three distantly related species. This analysis revealed similar activity spectra against pathogens, despite extensive structural variation among the tested peptides. In addition to conventional crustacean AMPs, our work highlights armadillidins as a new and independent family of AMPs specific to the Oniscidea, thus opening new perspectives concerning the study of the immune system of terrestrial isopods.

摘要

在甲壳动物中,根据其氨基酸组成和结构,抗菌肽 (AMPs) 分为四大类:(1) 含有半胱氨酸残基的单域肽,如抗脂多糖因子 (ALF),(2) 多域或嵌合 AMPs,如 crustins,(3) 非常规 AMPs,和 (4) 线性单域 AMPs。大多数 AMPs 已在商业开发的甲壳动物中被描述,特别是生活在水生环境中的十足目动物(蟹、虾、龙虾和淡水螯虾)。在这里,我们旨在建立陆地等足目动物(等足目)的 AMP 库,这是一种适应水生环境以外生活的甲壳动物原始亚目。使用来自 21 个物种的转录组数据,我们鉴定了 110 种 ALF 和 73 种 crustin 序列。我们还从 17 个物种中表征了完整的 armadillidins 序列,类似于先前在陆地等足目动物中描述的 AMP。此外,我们测试了从三个远缘相关物种中表征的三种 armadillidin 肽的抗菌活性。该分析显示了针对病原体的相似活性谱,尽管测试的肽之间存在广泛的结构变异。除了常规的甲壳动物 AMPs 外,我们的工作还强调了 armadillidins 是一种新的、独立的 AMP 家族,专门针对 Oniscidea,从而为陆地等足目动物免疫系统的研究开辟了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/7caa6d9bd61a/genes-11-00093-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/065cbca80bc0/genes-11-00093-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/b12667f51796/genes-11-00093-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/9b9f612e97c5/genes-11-00093-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/49efe52ed3b9/genes-11-00093-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/4da409b913d4/genes-11-00093-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/7caa6d9bd61a/genes-11-00093-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/065cbca80bc0/genes-11-00093-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/b12667f51796/genes-11-00093-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/9b9f612e97c5/genes-11-00093-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/49efe52ed3b9/genes-11-00093-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/4da409b913d4/genes-11-00093-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fdc/7017220/7caa6d9bd61a/genes-11-00093-g006.jpg

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Crustins are distinctive members of the WAP-containing protein superfamily: An improved classification approach.
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