Ai Chao, Zhang Jixin, Lian Shenyi, Ma Jie, Győrffy Balázs, Qian Zhenyuan, Han Yong, Feng Qin
Department of Pharmacy, Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua University, Beijing 102218, P. R. China.
Department of Pathology, Peking University First Hospital, Beijing, China.
J Cancer. 2020 Jan 1;11(4):788-794. doi: 10.7150/jca.37323. eCollection 2020.
Gastric cancer (GC) is one of the main mortality cause worldwide. Previously, we found Forkhead box protein (FOXM1) or Urokinase-type plasminogen activator (PLAU) are independent prognostic markers of GC. This study aims to explore the combining prognostic efficacy and the potential insights underlying additive effect of FOXM1 to PLAU in GC progression through in-silico analyses. The expression of FOXM1 and PLAU were profiled in 33 cancer types using public data. A merged GC expression dataset containing 598 samples was used for evaluating prognostic significance of FOXM1/PLAU. Gene Set Enrichment Analysis (GSEA) was performed to elucidate the mechanisms underlying FOXM1/PLAU promoted GC progression. The Cancer Genome Atlas (TCGA) was used for analyzing the association between FOXM1/PLAU and tumor immune infiltration. Genomic and proteomic differences between FOXM1+PLAU+ and FOXM1-PLAU- groups were also computed using TCGA GC data. Drugs targeting FOXM1/PLAU associated gene expression pattern was analyzed using LINCs database. FOXM1 and PLAU are overexpressed in 17/33 cancer types including GC. Kaplan-Meier analyses indicate that the FOXM1+PLAU+ subgroup have the worst prognosis, while FOXM1-PLAU- subgroup have the best survival. Bioinformatics analysis indicated that FOXM1+PLAU+ associated genes are enriched in TGF-beta, DNA repair and drug resistance signaling pathways; FOXM1 and PLAU expression are negatively correlated with tumor immune infiltration. Genomic and proteomic differences between FOXM1+PLAU+ and FOXM1-PLAU- groups were presented. Data mining from LINCs suggested several chemicals or drugs that could target the gene expression pattern of FOXM1+PLAU+ patients. FOXM1+PLAU+ can serve as effective prognostic biomarkers and potential therapeutic targets for GC. Due to the additive effect of these two genes, screening for drugs or chemicals that targeting the expression patterns PLAU+FOXM1+ subgroup may exert important clinical impact on GC management.
胃癌(GC)是全球主要的死亡原因之一。此前,我们发现叉头框蛋白(FOXM1)或尿激酶型纤溶酶原激活剂(PLAU)是GC的独立预后标志物。本研究旨在通过计算机分析探讨FOXM1与PLAU联合在GC进展中的预后效果及潜在的相加作用机制。利用公共数据对33种癌症类型中FOXM1和PLAU的表达进行了分析。一个包含598个样本的合并GC表达数据集用于评估FOXM1/PLAU的预后意义。进行基因集富集分析(GSEA)以阐明FOXM1/PLAU促进GC进展的机制。癌症基因组图谱(TCGA)用于分析FOXM1/PLAU与肿瘤免疫浸润之间的关联。还使用TCGA GC数据计算了FOXM1+PLAU+组和FOXM1-PLAU-组之间的基因组和蛋白质组差异。使用LINCs数据库分析了靶向FOXM1/PLAU相关基因表达模式的药物。FOXM1和PLAU在包括GC在内的17/33种癌症类型中过表达。Kaplan-Meier分析表明,FOXM1+PLAU+亚组预后最差,而FOXM1-PLAU-亚组生存情况最佳。生物信息学分析表明,FOXM1+PLAU+相关基因在转化生长因子-β、DNA修复和耐药信号通路中富集;FOXM1和PLAU表达与肿瘤免疫浸润呈负相关。呈现了FOXM1+PLAU+组和FOXM1-PLAU-组之间的基因组和蛋白质组差异。从LINCs的数据挖掘表明,有几种化学物质或药物可以靶向FOXM1+PLAU+患者的基因表达模式。FOXM1+PLAU+可作为GC有效的预后生物标志物和潜在的治疗靶点。由于这两个基因的相加作用,筛选靶向PLAU+FOXM1+亚组表达模式的药物或化学物质可能对GC的管理产生重要的临床影响。