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多基因风险药物强化在复杂疾病精准医学中的应用。

Pharmacological enrichment of polygenic risk for precision medicine in complex disorders.

机构信息

School of Biomedical Sciences and Pharmacy, The University of Newcastle, Callaghan, NSW, Australia.

Centre for Brain and Mental Health Research, Hunter Medical Research Institute, Newcastle, NSW, Australia.

出版信息

Sci Rep. 2020 Jan 21;10(1):879. doi: 10.1038/s41598-020-57795-0.

Abstract

Individuals with complex disorders typically have a heritable burden of common variation that can be expressed as a polygenic risk score (PRS). While PRS has some predictive utility, it lacks the molecular specificity to be directly informative for clinical interventions. We therefore sought to develop a framework to quantify an individual's common variant enrichment in clinically actionable systems responsive to existing drugs. This was achieved with a metric designated the pharmagenic enrichment score (PES), which we demonstrate for individual SNP profiles in a cohort of cases with schizophrenia. A large proportion of these had elevated PES in one or more of eight clinically actionable gene-sets enriched with schizophrenia associated common variation. Notable candidates targeting these pathways included vitamins, antioxidants, insulin modulating agents, and cholinergic drugs. Interestingly, elevated PES was also observed in individuals with otherwise low common variant burden. The biological saliency of PES profiles were observed directly through their impact on gene expression in a subset of the cohort with matched transcriptomic data, supporting our assertion that this gene-set orientated approach could integrate an individual's common variant risk to inform personalised interventions, including drug repositioning, for complex disorders such as schizophrenia.

摘要

个体患有复杂疾病通常具有遗传的常见变异负担,可以表示为多基因风险评分(PRS)。虽然 PRS 具有一定的预测效用,但它缺乏分子特异性,无法直接为临床干预提供信息。因此,我们试图开发一种框架,以量化个体对现有药物有反应的临床可操作系统中的常见变异富集。这是通过一种名为pharmagenic 富集评分(PES)的指标来实现的,我们在精神分裂症病例队列中的个体 SNP 图谱中证明了这一点。这些人中的很大一部分在八个临床可操作的基因集中的一个或多个基因集中存在升高的 PES,这些基因集中富含与精神分裂症相关的常见变异。针对这些途径的显著候选药物包括维生素、抗氧化剂、胰岛素调节剂和胆碱能药物。有趣的是,在其他常见变异负担较低的个体中也观察到了升高的 PES。通过在具有匹配转录组数据的队列的亚集中观察 PES 图谱对基因表达的直接影响,观察到了 PES 图谱的生物学显著性,支持了我们的断言,即这种基于基因集的方法可以整合个体的常见变异风险,为复杂疾病(如精神分裂症)提供个性化干预,包括药物再定位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0bcf/6972917/b10650da092a/41598_2020_57795_Fig1_HTML.jpg

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