• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

单分子电学测量与机器学习相结合用于单生物分子识别

Combination of Single-Molecule Electrical Measurements and Machine Learning for the Identification of Single Biomolecules.

作者信息

Taniguchi Masateru

机构信息

The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka 567-0047, Japan.

出版信息

ACS Omega. 2020 Jan 7;5(2):959-964. doi: 10.1021/acsomega.9b03660. eCollection 2020 Jan 21.

DOI:10.1021/acsomega.9b03660
PMID:31984250
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6977028/
Abstract

The development of a next-generation DNA sequencer has provided a method for electrically measuring single molecules. Methods for electrically measuring one molecule are roughly divided into methods for measuring tunneling and ion currents. These methods enable identification of a single molecule of DNA, a RNA nucleotide, or a single protein based on current histograms. However, overlapping of current histograms of molecules with similar properties has been a major barrier to identifying single molecules with high accuracy. This barrier was broken by introducing machine learning. Combining single-molecule electrical measurement and machine learning enables high-precision identification of single molecules. Highly accurate discrimination has been demonstrated for DNA nucleotides, RNA nucleotides, amino acids, sugars, viruses, and bacteria. This combination enables quantitative evaluation of molecular recognition ability. Furthermore, a device structure suitable for high-precision identification has been designed. Combining single-molecule electrical measurement with machine learning enables digital analytical chemistry that can count certain types of molecules. Digital analytical chemistry enables comprehensive analysis of chemical reactions. This new analytical method will lead to the discovery of unknown or missed valuable molecules.

摘要

下一代DNA测序仪的发展提供了一种电测量单分子的方法。电测量单个分子的方法大致分为测量隧道电流和离子电流的方法。这些方法能够基于电流直方图识别单个DNA分子、RNA核苷酸或单个蛋白质。然而,具有相似性质的分子的电流直方图重叠一直是高精度识别单个分子的主要障碍。通过引入机器学习打破了这一障碍。将单分子电测量与机器学习相结合能够高精度识别单分子。对于DNA核苷酸、RNA核苷酸、氨基酸、糖类、病毒和细菌,已经证明了能够进行高度准确的区分。这种结合能够对分子识别能力进行定量评估。此外,还设计了一种适用于高精度识别的器件结构。将单分子电测量与机器学习相结合能够实现可对特定类型分子进行计数的数字分析化学。数字分析化学能够对化学反应进行全面分析。这种新的分析方法将导致发现未知或遗漏的有价值分子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/efc4f8e07f2b/ao9b03660_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/ebaa8d2300ff/ao9b03660_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/829b5f82f4e1/ao9b03660_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/d9903e521f6b/ao9b03660_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/efc4f8e07f2b/ao9b03660_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/ebaa8d2300ff/ao9b03660_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/829b5f82f4e1/ao9b03660_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/d9903e521f6b/ao9b03660_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d2e/6977028/efc4f8e07f2b/ao9b03660_0004.jpg

相似文献

1
Combination of Single-Molecule Electrical Measurements and Machine Learning for the Identification of Single Biomolecules.单分子电学测量与机器学习相结合用于单生物分子识别
ACS Omega. 2020 Jan 7;5(2):959-964. doi: 10.1021/acsomega.9b03660. eCollection 2020 Jan 21.
2
Recognition Tunneling of Canonical and Modified RNA Nucleotides for Their Identification with the Aid of Machine Learning.基于机器学习的对标准和修饰 RNA 核苷酸的识别隧道用于它们的鉴定。
ACS Nano. 2018 Jul 24;12(7):7067-7075. doi: 10.1021/acsnano.8b02819. Epub 2018 Jun 28.
3
Cucurbituril mediated single molecule detection and identification via recognition tunneling.瓜环介导的通过识别隧穿进行单分子检测与鉴定
Nanotechnology. 2018 Sep 7;29(36):365501. doi: 10.1088/1361-6528/aacb63. Epub 2018 Jun 8.
4
Nucleotide and structural label identification in single RNA molecules with quantum tunneling spectroscopy.利用量子隧穿光谱法对单个RNA分子中的核苷酸和结构标签进行识别
Chem Sci. 2018 Nov 5;10(4):1052-1063. doi: 10.1039/c8sc03354d. eCollection 2019 Jan 28.
5
Single-Molecule Electrical Detection: A Promising Route toward the Fundamental Limits of Chemistry and Life Science.单分子电学检测:通向化学和生命科学基本极限的一条有前景的途径。
Acc Chem Res. 2020 Jan 21;53(1):159-169. doi: 10.1021/acs.accounts.9b00347. Epub 2019 Sep 23.
6
Direct biomolecule discrimination in mixed samples using nanogap-based single-molecule electrical measurement.基于纳腔的单分子电学测量在混合样品中直接进行生物分子鉴别。
Sci Rep. 2023 Jun 5;13(1):9103. doi: 10.1038/s41598-023-35724-1.
7
Length Discrimination of Homo-oligomeric Nucleic Acids with Single-molecule Measurement.利用单分子测量对同寡聚核酸进行长度区分。
Anal Sci. 2021 Mar 10;37(3):513-517. doi: 10.2116/analsci.20SCP13. Epub 2020 Dec 11.
8
Single-Molecule Classification of Aspartic Acid and Leucine by Molecular Recognition through Hydrogen Bonding and Time-Series Analysis.通过氢键和时间序列分析的分子识别对天冬氨酸和亮氨酸的单分子分类。
Chem Asian J. 2022 Jul 1;17(13):e202200179. doi: 10.1002/asia.202200179. Epub 2022 May 4.
9
Quantum Point Contact Single-Nucleotide Conductance for DNA and RNA Sequence Identification.量子点接触单核苷酸电导用于 DNA 和 RNA 序列鉴定。
ACS Nano. 2017 Nov 28;11(11):11169-11181. doi: 10.1021/acsnano.7b05500. Epub 2017 Oct 6.
10
[Aiming for zero blindness].追求零失明
Nippon Ganka Gakkai Zasshi. 2015 Mar;119(3):168-93; discussion 194.

引用本文的文献

1
Single-Molecule Bioelectronic Sensors with AI-Aided Data Analysis: Convergence and Challenges.具有人工智能辅助数据分析的单分子生物电子传感器:融合与挑战
Precis Chem. 2024 Sep 16;2(10):518-538. doi: 10.1021/prechem.4c00048. eCollection 2024 Oct 28.
2
Optical Image Sensors for Smart Analytical Chemiluminescence Biosensors.用于智能分析化学发光生物传感器的光学图像传感器
Bioengineering (Basel). 2024 Sep 12;11(9):912. doi: 10.3390/bioengineering11090912.
3
Machine learning empowered next generation DNA sequencing: perspective and prospectus.

本文引用的文献

1
Identifying Single Viruses Using Biorecognition Solid-State Nanopores.利用生物识别固态纳米孔鉴定单病毒。
J Am Chem Soc. 2018 Dec 5;140(48):16834-16841. doi: 10.1021/jacs.8b10854. Epub 2018 Nov 26.
2
Selective detections of single-viruses using solid-state nanopores.利用固态纳米孔选择性检测单病毒。
Sci Rep. 2018 Nov 2;8(1):16305. doi: 10.1038/s41598-018-34665-4.
3
Paving the way to single-molecule protein sequencing.为单分子蛋白质测序铺平道路。
机器学习助力下一代DNA测序:现状与展望
Chem Sci. 2024 Jul 8;15(31):12169-12188. doi: 10.1039/d4sc01714e. eCollection 2024 Aug 7.
4
Reduction of Biosensor False Responses and Time Delay Using Dynamic Response and Theory-Guided Machine Learning.利用动态响应和理论指导的机器学习减少生物传感器的假响应和时间延迟。
ACS Sens. 2023 Nov 24;8(11):4079-4090. doi: 10.1021/acssensors.3c01258. Epub 2023 Nov 6.
5
A Guide to Signal Processing Algorithms for Nanopore Sensors.纳米孔传感器信号处理算法指南。
ACS Sens. 2021 Oct 22;6(10):3536-3555. doi: 10.1021/acssensors.1c01618. Epub 2021 Oct 4.
6
Adeno-associated virus characterization for cargo discrimination through nanopore responsiveness.通过纳米孔响应对货物进行分类的腺相关病毒特性分析。
Nanoscale. 2020 Dec 8;12(46):23721-23731. doi: 10.1039/d0nr05605g.
Nat Nanotechnol. 2018 Sep;13(9):786-796. doi: 10.1038/s41565-018-0236-6. Epub 2018 Sep 6.
4
Recognition Tunneling of Canonical and Modified RNA Nucleotides for Their Identification with the Aid of Machine Learning.基于机器学习的对标准和修饰 RNA 核苷酸的识别隧道用于它们的鉴定。
ACS Nano. 2018 Jul 24;12(7):7067-7075. doi: 10.1021/acsnano.8b02819. Epub 2018 Jun 28.
5
Identification of Individual Bacterial Cells through the Intermolecular Interactions with Peptide-Functionalized Solid-State Pores.通过与肽功能化固态孔的分子间相互作用鉴定单个细菌细胞。
Anal Chem. 2018 Feb 6;90(3):1511-1515. doi: 10.1021/acs.analchem.7b04950. Epub 2018 Jan 19.
6
Discriminating single-bacterial shape using low-aspect-ratio pores.利用低纵横比孔隙区分单个细菌形状。
Sci Rep. 2017 Dec 12;7(1):17371. doi: 10.1038/s41598-017-17443-6.
7
Smartphone-Based Food Diagnostic Technologies: A Review.基于智能手机的食物诊断技术:综述。
Sensors (Basel). 2017 Jun 20;17(6):1453. doi: 10.3390/s17061453.
8
Universal Readers Based on Hydrogen Bonding or π-π Stacking for Identification of DNA Nucleotides in Electron Tunnel Junctions.基于氢键或π-π 堆积的通用读取器用于电子隧道结中 DNA 核苷酸的识别。
ACS Nano. 2016 Dec 27;10(12):11304-11316. doi: 10.1021/acsnano.6b06466. Epub 2016 Nov 22.
9
Electronic single-molecule identification of carbohydrate isomers by recognition tunnelling.通过识别隧穿对糖异构体进行电子单分子鉴定。
Nat Commun. 2016 Dec 21;7:13868. doi: 10.1038/ncomms13868.
10
Graphene nanodevices for DNA sequencing.用于 DNA 测序的石墨烯纳米器件。
Nat Nanotechnol. 2016 Feb;11(2):127-36. doi: 10.1038/nnano.2015.307.