Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.
Department of Mathematics, University of Texas at San Antonio, San Antonio, TX, 78249, USA.
Comput Biol Chem. 2020 Apr;85:107211. doi: 10.1016/j.compbiolchem.2020.107211. Epub 2020 Jan 22.
As part of the type I IFN signaling, the 2'-5'- oligoadenylate synthetase (OAS) proteins have been involved in the progression of several non-viral diseases. Notably, OAS has been correlated with immune-modulatory functions that promote chronic inflammatory conditions, autoimmune disorders, cancer, and infectious diseases. In spite of this, OAS enzymes have been ignored as drug targets, and to date, there are no reports of compounds that can inhibit their activity. In this study, we have used homology modeling and virtual high-throughput screening to identify potential inhibitors of the human proteins OAS1, OAS2, and OAS3. Altogether, we have found 37 molecules that could exert a competitive inhibition in the ATP binding sites of OAS proteins, independently of the activation state of the enzyme. This latter characteristic, which might be crucial for a versatile inhibitor, was observed in compounds interacting with the residues Asp75, Asp77, Gln229, and Tyr230 in OAS1, and their equivalents in OAS2 and OAS3. Although there was little correlation between specific chemical fragments and their interactions, intermolecular contacts with OAS catalytic triad and other critical amino acids were mainly promoted by heterocycles with π electrons and hydrogen bond acceptors. In conclusion, this study provides a potential set of OAS inhibitors as well as valuable information for their design, development, and optimization.
作为 I 型干扰素信号通路的一部分,2'-5'-寡聚腺苷酸合成酶 (OAS) 蛋白参与了多种非病毒性疾病的进展。值得注意的是,OAS 与免疫调节功能有关,这些功能可促进慢性炎症状态、自身免疫性疾病、癌症和传染病。尽管如此,OAS 酶仍被忽视作为药物靶点,迄今为止,尚无报道称有能抑制其活性的化合物。在这项研究中,我们使用同源建模和虚拟高通量筛选来鉴定人 OAS1、OAS2 和 OAS3 蛋白的潜在抑制剂。总的来说,我们发现了 37 种可以在 OAS 蛋白的 ATP 结合位点上发挥竞争性抑制作用的分子,而与酶的激活状态无关。这种特征可能对多功能抑制剂至关重要,在与 OAS1 中的残基 Asp75、Asp77、Gln229 和 Tyr230 及其在 OAS2 和 OAS3 中的等效物相互作用的化合物中观察到。尽管特定化学片段及其相互作用之间几乎没有相关性,但与 OAS 催化三联体和其他关键氨基酸的分子间接触主要由具有π电子和氢键受体的杂环促进。总之,这项研究提供了一组潜在的 OAS 抑制剂,以及有关其设计、开发和优化的有价值信息。