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保存在龙涎香喷气机浮渣琥珀中的 DNA。

DNA preserved in jetsam whale ambergris.

机构信息

Section for EvoGenomics, The GLOBE Institute, University of Copenhagen, Øster Farimagsgade 5, 1353 København K, Denmark.

Homerton College, University of Cambridge, Hills Road, Cambridge CB2 8PH, UK.

出版信息

Biol Lett. 2020 Feb;16(2):20190819. doi: 10.1098/rsbl.2019.0819. Epub 2020 Feb 5.

Abstract

Jetsam ambergris, found on beaches worldwide, has always been assumed to originate as a natural product of sperm whales (Physeteroidea). However, only indirect evidence has ever been produced for this, such as the presence of whale prey remains in ambergris. Here, we extracted and analysed DNA sequences from jetsam ambergris from beaches in New Zealand and Sri Lanka, and sequences from ambergris of a sperm whale beached in The Netherlands. The lipid-rich composition of ambergris facilitated high preservation-quality of endogenous DNA, upon which we performed shotgun Illumina sequencing. Alignment of mitochondrial and nuclear genome sequences with open-access reference data for multiple whale species confirms that all three jetsam samples derived originally from sperm whales (). Shotgun sequencing here also provides implications for metagenomic insights into ambergris-preserved DNA. These results demonstrate significant implications for elucidating the origins of jetsam ambergris as a prized natural product, and also for the understanding of sperm whale metabolism and diet, and the ecological mechanisms underlying these coproliths.

摘要

漂浮在世界各地海滩上的龙涎香,一直被认为是抹香鲸(Physeteroidea)的天然产物。然而,人们只是提供了一些间接证据来支持这一观点,比如在龙涎香中发现了鲸鱼的猎物残骸。在这里,我们从新西兰和斯里兰卡海滩上的漂浮龙涎香中提取和分析了 DNA 序列,以及在荷兰搁浅的抹香鲸的龙涎香中的 DNA 序列。龙涎香富含脂质,有利于内源性 DNA 的高质量保存,我们对其进行了 Illumina 测序。将线粒体和核基因组序列与多个鲸鱼物种的开放访问参考数据进行比对,证实了这三个漂浮样本最初都来自抹香鲸。这里的鸟枪法测序还为研究龙涎香中保存的 DNA 的宏基因组学提供了一些启示。这些结果表明,对漂浮龙涎香起源的研究具有重要意义,不仅有助于阐明这种珍贵天然产物的起源,还有助于理解抹香鲸的新陈代谢和饮食,以及这些粪化石背后的生态机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9bf7/7058951/a6e8e86d72a1/rsbl20190819-g2.jpg

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