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海胆管足和黏附分泌物的综合转录组和蛋白质组分析

Integrative Transcriptome and Proteome Analysis of the Tube Foot and Adhesive Secretions of the Sea Urchin .

机构信息

Institute of Zoology and Center of Molecular Biosciences Innsbruck, University of Innsbruck, 6020 Innsbruck, Austria.

Division of Clinical Biochemistry, Biocenter, Innsbruck Medical University, 6020 Innsbruck, Austria.

出版信息

Int J Mol Sci. 2020 Jan 31;21(3):946. doi: 10.3390/ijms21030946.

Abstract

Echinoderms, such as the rock-boring sea urchin , attach temporarily to surfaces during locomotion using their tube feet. They can attach firmly to any substrate and release from it within seconds through the secretion of unknown molecules. The composition of the adhesive, as well as the releasing secretion, remains largely unknown. This study re-analyzed a differential proteome dataset from Lebesgue et al. by mapping mass spectrometry-derived peptides to a transcriptome generated in this study. This resulted in a drastic increase in mapped proteins in comparison to the previous publication. The data were subsequently combined with a differential RNAseq approach to identify potential adhesion candidate genes. A gene expression analysis of 59 transcripts using whole mount in situ hybridization led to the identification of 16 transcripts potentially involved in bioadhesion. In the future these data could be useful for the production of synthetic reversible adhesives for industrial and medical purposes.

摘要

棘皮动物,如钻洞的海胆,在运动过程中使用管足暂时附着在表面上。它们可以牢固地附着在任何基质上,并通过分泌未知分子在几秒钟内释放。粘附物的组成以及释放分泌物在很大程度上仍然未知。本研究通过将质谱衍生的肽映射到本研究中生成的转录组,重新分析了 Lebesgue 等人的差异蛋白质组数据集。与之前的出版物相比,这导致映射蛋白数量大幅增加。随后,将数据与差异 RNAseq 方法相结合,以鉴定潜在的粘附候选基因。使用整体原位杂交对 59 个转录本进行基因表达分析,鉴定出 16 个可能参与生物粘附的转录本。未来,这些数据可能有助于为工业和医疗目的生产合成可逆粘合剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2462/7037938/eec598819d07/ijms-21-00946-g0A1.jpg

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