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一种用于RNA及类RNA聚合物的益生元聚合反应的逐步加成模型。

A Polyaddition Model for the Prebiotic Polymerization of RNA and RNA-Like Polymers.

作者信息

Spaeth Alex, Hargrave Mason

机构信息

Department of Computer Engineering, University of California, Santa Cruz, CA 95064, USA.

Center for Studies in Physics and Biology, The Rockefeller University, New York, NY 10065, USA.

出版信息

Life (Basel). 2020 Feb 2;10(2):12. doi: 10.3390/life10020012.

Abstract

Implicit in the RNA world hypothesis is that prebiotic RNA synthesis, despite occurring in an environment without biochemical catalysts, produced the long RNA polymers which are essential to the formation of life. In order to investigate the prebiotic formation of long RNA polymers, we consider a general solution of functionally identical monomer units that are capable of bonding to form linear polymers by a step-growth process. Under the assumptions that (1) the solution is well-mixed and (2) bonding/unbonding rates are independent of polymerization state, the concentration of each length of polymer follows the geometric Flory-Schulz distribution. We consider the rate dynamics that produce this equilibrium; connect the rate dynamics, Gibbs free energy of bond formation, and the bonding probability; solve the dynamics in closed form for the representative special case of a Flory-Schulz initial condition; and demonstrate the effects of imposing a maximum polymer length. Afterwards, we derive a lower bound on the error introduced , we suggest methods to connect these theoretical predictions to experimental results.

摘要

RNA世界假说中隐含的观点是,尽管益生元RNA合成发生在没有生物化学催化剂的环境中,但仍产生了对生命形成至关重要的长RNA聚合物。为了研究长RNA聚合物的益生元形成过程,我们考虑了一种功能相同的单体单元的通用解决方案,这些单体单元能够通过逐步增长过程结合形成线性聚合物。在以下假设下:(1)溶液充分混合;(2)键合/解离速率与聚合状态无关,每种长度聚合物的浓度遵循几何弗洛里-舒尔茨分布。我们考虑产生这种平衡的速率动力学;将速率动力学、键形成的吉布斯自由能和键合概率联系起来;针对弗洛里-舒尔茨初始条件的代表性特殊情况以封闭形式求解动力学;并展示施加最大聚合物长度的影响。之后,我们推导引入误差的下限,我们建议将这些理论预测与实验结果联系起来的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b1d/7175168/66de558ce738/life-10-00012-g001.jpg

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