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数据科学与肿瘤学进化理论之间的前景广阔的联系。

The Promising Connection Between Data Science and Evolutionary Theory in Oncology.

作者信息

Goodman Jonathan R, Ashrafian Hutan

机构信息

Leverhulme Centre for Human Evolutionary Studies, University of Cambridge, Cambridge, United Kingdom.

Institute of Global Health Innovation, Imperial College London, London, United Kingdom.

出版信息

Front Oncol. 2020 Jan 20;9:1527. doi: 10.3389/fonc.2019.01527. eCollection 2019.

DOI:10.3389/fonc.2019.01527
PMID:32039014
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6984404/
Abstract

Theoretical and empirical work over the past several decades suggests that oncogenesis and disease progression represents an evolutionary story. Despite this knowledge, current anti-resistance strategies to drugs are often managed through treating cancers as independent biological agents divorced from human activity. Yet once drug resistance to cancer treatment is understood as a product of artificial or anthropogenic rather than unconscious selection, oncologists could improve outcomes for their patients by consulting evolutionary studies of oncology prior to clinical trial and treatment plan design. In the setting of multiple cancer types, for example, a machine learning algorithm can predict the genetic changes known to be related to drug resistance. In this way, a unity between technology and theory might have practical clinical implications-and may pave the way for a new paradigm shift in medicine.

摘要

过去几十年的理论和实证研究表明,肿瘤发生和疾病进展是一个进化的过程。尽管有了这一认识,但目前针对癌症药物的抗耐药策略往往是将癌症当作与人类活动无关的独立生物因子来处理。然而,一旦将癌症治疗耐药性理解为人工或人为选择而非无意识选择的产物,肿瘤学家就可以在临床试验和治疗方案设计之前参考肿瘤学的进化研究,从而改善患者的治疗效果。例如,在多种癌症类型的情况下,机器学习算法可以预测已知与耐药性相关的基因变化。通过这种方式,技术与理论的结合可能会产生实际的临床意义,并可能为医学领域的新范式转变铺平道路。

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1
The Promising Connection Between Data Science and Evolutionary Theory in Oncology.数据科学与肿瘤学进化理论之间的前景广阔的联系。
Front Oncol. 2020 Jan 20;9:1527. doi: 10.3389/fonc.2019.01527. eCollection 2019.
2
Holistic Darwinism: the new evolutionary paradigm and some implications for political science.整体达尔文主义:新的进化范式及其对政治学的一些启示
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Chronoastrobiology: proposal, nine conferences, heliogeomagnetics, transyears, near-weeks, near-decades, phylogenetic and ontogenetic memories.时间天体生物学:提议、九次会议、日地地磁学、跨年份、近周、近十年、系统发生和个体发生记忆。
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Integrating frontiers: a holistic, quantum and evolutionary approach to conquering cancer through systems biology and multidisciplinary synergy.整合前沿:一种通过系统生物学和多学科协同作用征服癌症的整体、量子和进化方法。
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From a Patient Advocate's Perspective: Does Cancer Immunotherapy Represent a Paradigm Shift?从患者权益倡导者的角度来看:癌症免疫疗法是否代表了一种范式转变?
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Evolution, selection and cognition: from "learning" to parameter setting in biology and in the study of language.进化、选择与认知:从生物学及语言研究中的“学习”到参数设置
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本文引用的文献

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Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers.克隆选择赋予 BRAF 驱动型癌症独特的进化轨迹。
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Moving the systemic evolutionary approach to cancer forward: Therapeutic implications.推动癌症系统进化方法的前进:治疗意义。
Med Hypotheses. 2018 Dec;121:80-87. doi: 10.1016/j.mehy.2018.09.033. Epub 2018 Sep 19.
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Detecting repeated cancer evolution from multi-region tumor sequencing data.从多区域肿瘤测序数据中检测癌症的重复进化。
Nat Methods. 2018 Sep;15(9):707-714. doi: 10.1038/s41592-018-0108-x. Epub 2018 Aug 31.
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Eco-evolutionary causes and consequences of temporal changes in intratumoural blood flow.肿瘤内血流时间变化的生态进化原因和后果。
Nat Rev Cancer. 2018 Sep;18(9):576-585. doi: 10.1038/s41568-018-0030-7.
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Integrating evolutionary dynamics into treatment of metastatic castrate-resistant prostate cancer.将进化动态纳入转移性去势抵抗性前列腺癌的治疗中。
Nat Commun. 2017 Nov 28;8(1):1816. doi: 10.1038/s41467-017-01968-5.
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Classifying the evolutionary and ecological features of neoplasms.对肿瘤的进化和生态特征进行分类。
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Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance.罕见细胞变异性和药物诱导的重编程作为癌症耐药的一种模式。
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Tracking the Evolution of Non-Small-Cell Lung Cancer.跟踪非小细胞肺癌的演变。
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Modeling Tumor Clonal Evolution for Drug Combinations Design.用于药物组合设计的肿瘤克隆进化建模
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