Unit of Medical Statistics and Molecular Epidemiology, University Campus Bio-Medico of Rome, Italy.
Laboratório de Flavivírus, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Pathog Glob Health. 2020 Mar;114(2):64-67. doi: 10.1080/20477724.2020.1725339. Epub 2020 Feb 12.
The global spread of the 2019-nCoV is continuing and is fast moving, as indicated by the WHO raising the risk assessment to high. In this article, we provide a preliminary phylodynamic and phylogeographic analysis of this new virus. A Maximum Clade Credibility tree has been built using the 29 available whole genome sequences of 2019-nCoV and two whole genome sequences that are highly similar sequences from Bat SARS-like Coronavirus available in GeneBank. We are able to clarify the mechanism of transmission among the countries which have provided the 2019-nCoV sequence isolates from their patients. The Bayesian phylogeographic reconstruction shows that the 2019-2020 nCoV most probably originated from the Bat SARS-like Coronavirus circulating in the bat family. In agreement with epidemiological observations, the most likely geographic origin of the new outbreak was the city of Wuhan, China, where 2019-nCoV time of the most recent common ancestor emerged, according to molecular clock analysis, around November 25, 2019. These results, together with previously recorded epidemics, suggest a recurring pattern of periodical epizootic outbreaks due to . Moreover, our study describes the same population genetic dynamic underlying the SARS 2003 epidemic, and suggests the urgent need for the development of effective molecular surveillance strategies of among animals and of the bat family.
2019-nCoV 在全球范围内持续快速传播,世界卫生组织已将其风险评估上调至高风险级别。在本文中,我们对这种新型病毒进行了初步的系统发育和系统地理学分析。我们使用 29 个可用的 2019-nCoV 全基因组序列和两个在 GeneBank 中高度相似的蝙蝠 SARS 样冠状病毒全基因组序列构建了最大简约可信度树。我们能够阐明已提供 2019-nCoV 序列分离株的国家之间的传播机制。贝叶斯系统地理学重建表明,2019-2020 年新型冠状病毒很可能源自在蝙蝠种群中传播的蝙蝠 SARS 样冠状病毒。与流行病学观察结果一致,根据分子钟分析,新爆发的最有可能的地理起源是中国武汉,2019-nCoV 的最近共同祖先时间大约出现在 2019 年 11 月 25 日。这些结果与之前记录的疫情一起表明,由于病毒的周期性动物间爆发,会反复出现周期性的动物疫情爆发。此外,我们的研究描述了 2003 年 SARS 流行背后的相同种群遗传动态,并表明迫切需要制定有效的动物和蝙蝠种群中冠状病毒分子监测策略。