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必需代谢物漏出对细胞的益处。

Advantage of Leakage of Essential Metabolites for Cells.

机构信息

Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.

Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.

出版信息

Phys Rev Lett. 2020 Jan 31;124(4):048101. doi: 10.1103/PhysRevLett.124.048101.

DOI:10.1103/PhysRevLett.124.048101
PMID:32058757
Abstract

Microbial cells generally leak various metabolites including those necessary to grow. Why cells secrete even essential chemicals so often is, however, still unclear. Based on analytical and numerical calculations, we show that if the intracellular metabolism includes multibody (e.g., catalytic) reactions, leakage of essential metabolites can promote the leaking cell's growth. This advantage is typical for most metabolic networks via "flux control" and "growth-dilution" mechanisms, as a general consequence of the balance between synthesis and growth-induced dilution with autocatalytic reactions. We further argue that this advantage may lead to a novel form of symbiosis among diverse cells.

摘要

微生物细胞通常会泄漏各种代谢物,包括生长所需的物质。然而,细胞为什么经常分泌即使是必需的化学物质仍然不清楚。基于分析和数值计算,我们表明,如果细胞内代谢包括多体(例如催化)反应,那么必需代谢物的泄漏可以促进泄漏细胞的生长。通过“通量控制”和“生长稀释”机制,这种优势对于大多数代谢网络来说是典型的,这是由于自催化反应的合成和生长诱导稀释之间的平衡的一般结果。我们进一步认为,这种优势可能导致不同细胞之间形成一种新的共生形式。

相似文献

1
Advantage of Leakage of Essential Metabolites for Cells.必需代谢物漏出对细胞的益处。
Phys Rev Lett. 2020 Jan 31;124(4):048101. doi: 10.1103/PhysRevLett.124.048101.
2
Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem.代谢物渗漏的适应性导致共生化学交换,并形成有弹性的微生物生态系统。
PLoS Comput Biol. 2021 Jun 23;17(6):e1009143. doi: 10.1371/journal.pcbi.1009143. eCollection 2021 Jun.
3
Structural analysis of metabolic networks based on flux centrality.基于通量中心性的代谢网络结构分析
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Syntrophy emerges spontaneously in complex metabolic systems.共生关系在复杂的代谢系统中自发出现。
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Flux balance analysis accounting for metabolite dilution.通量平衡分析考虑代谢物稀释。
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6
Resource constrained flux balance analysis predicts selective pressure on the global structure of metabolic networks.资源受限通量平衡分析预测了对代谢网络全局结构的选择压力。
BMC Syst Biol. 2015 Nov 23;9:88. doi: 10.1186/s12918-015-0232-5.
7
The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum.利用基因组规模的代谢网络重建来预测固氮蓝藻红海束毛藻中固氮细胞与固碳细胞的通量和平衡组成。
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Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance.微生物群落形成丰富的细胞外代谢组,促进代谢相互作用并促进药物耐受性。
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Cell Growth Model with Stochastic Gene Expression Helps Understand the Growth Advantage of Metabolic Exchange and Auxotrophy.具有随机基因表达的细胞生长模型有助于理解代谢交换和营养缺陷型的生长优势。
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Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem.代谢物渗漏的适应性导致共生化学交换,并形成有弹性的微生物生态系统。
PLoS Comput Biol. 2021 Jun 23;17(6):e1009143. doi: 10.1371/journal.pcbi.1009143. eCollection 2021 Jun.