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竞争与合作在微生物群落凝聚中的作用。

The role of competition versus cooperation in microbial community coalescence.

机构信息

Department of Ecology & Evolution, University of Chicago, Chicago, Illinois, United States of America.

Department of Life Sciences, Imperial College London, Ascot, United Kingdom.

出版信息

PLoS Comput Biol. 2021 Nov 8;17(11):e1009584. doi: 10.1371/journal.pcbi.1009584. eCollection 2021 Nov.

Abstract

New microbial communities often arise through the mixing of two or more separately assembled parent communities, a phenomenon that has been termed "community coalescence". Understanding how the interaction structures of complex parent communities determine the outcomes of coalescence events is an important challenge. While recent work has begun to elucidate the role of competition in coalescence, that of cooperation, a key interaction type commonly seen in microbial communities, is still largely unknown. Here, using a general consumer-resource model, we study the combined effects of competitive and cooperative interactions on the outcomes of coalescence events. To do so, we simulate coalescence events between pairs of communities with different degrees of competition for shared carbon resources and cooperation through cross-feeding on leaked metabolic by-products (facilitation). We also study how structural and functional properties of post-coalescence communities evolve when they are subjected to repeated coalescence events. We find that in coalescence events, the less competitive and more cooperative parent communities contribute a higher proportion of species to the new community because of their superior ability to deplete resources and resist invasions. Consequently, when a community is subjected to repeated coalescence events, it gradually evolves towards being less competitive and more cooperative, as well as more speciose, robust and efficient in resource use. Encounters between microbial communities are becoming increasingly frequent as a result of anthropogenic environmental change, and there is great interest in how the coalescence of microbial communities affects environmental and human health. Our study provides new insights into the mechanisms behind microbial community coalescence, and a framework to predict outcomes based on the interaction structures of parent communities.

摘要

新的微生物群落通常通过两种或多种单独组装的母体群落的混合而出现,这种现象被称为“群落凝聚”。了解复杂母体群落的相互作用结构如何决定凝聚事件的结果是一个重要的挑战。虽然最近的工作已经开始阐明竞争在凝聚中的作用,但合作,一种在微生物群落中常见的关键相互作用类型,仍然在很大程度上未知。在这里,我们使用一般的消费者-资源模型,研究竞争和合作相互作用对凝聚事件结果的综合影响。为此,我们模拟了具有不同程度共享碳资源竞争和通过代谢副产物(促进)交叉喂养合作的母体群落之间的凝聚事件。我们还研究了当它们受到反复凝聚事件时,凝聚后群落的结构和功能特性如何演变。我们发现,在凝聚事件中,竞争程度较低、合作程度较高的母体群落由于其消耗资源和抵御入侵的能力较强,会有更高比例的物种贡献给新群落。因此,当一个群落受到反复的凝聚事件时,它会逐渐朝着竞争程度较低、合作程度较高、物种丰富度较高、对资源利用更稳健和高效的方向进化。由于人为环境变化,微生物群落之间的相遇变得越来越频繁,人们对微生物群落的凝聚如何影响环境和人类健康非常感兴趣。我们的研究提供了微生物群落凝聚背后的机制的新见解,并提供了一个基于母体群落相互作用结构来预测结果的框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f71/8601617/2f40556f46ae/pcbi.1009584.g001.jpg

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