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甲醛与四氢叶酸的缩合速率

Rate of Formaldehyde Condensation with Tetrahydrofolate.

作者信息

He Hai, Noor Elad, Ramos-Parra Perla A, García-Valencia Liliana E, Patterson Jenelle A, Díaz de la Garza Rocío I, Hanson Andrew D, Bar-Even Arren

机构信息

Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.

Institute of Molecular Systems Biology, ETH Zürich, Otto-Stern-Weg 3, 8093 Zürich, Switzerland.

出版信息

Metabolites. 2020 Feb 12;10(2):65. doi: 10.3390/metabo10020065.

Abstract

Formaldehyde is a highly reactive compound that participates in multiple spontaneous reactions, but these are mostly deleterious and damage cellular components. In contrast, the spontaneous condensation of formaldehyde with tetrahydrofolate (THF) has been proposed to contribute to the assimilation of this intermediate during growth on C carbon sources such as methanol. However, the rate of this condensation reaction is unknown and its possible contribution to growth remains elusive. Here, we used microbial platforms to assess the rate of this condensation in the cellular environment. We constructed strains lacking the enzymes that naturally produce 5,10-methylene-THF. These strains were able to grow on minimal medium only when equipped with a sarcosine (-methyl-glycine) oxidation pathway that sustained a high cellular concentration of formaldehyde, which spontaneously reacts with THF to produce 5,10-methylene-THF. We used flux balance analysis to derive the rate of the spontaneous condensation from the observed growth rate. According to this, we calculated that a microorganism obtaining its entire biomass via the spontaneous condensation of formaldehyde with THF would have a doubling time of more than three weeks. Hence, this spontaneous reaction is unlikely to serve as an effective route for formaldehyde assimilation.

摘要

甲醛是一种高反应性化合物,会参与多种自发反应,但这些反应大多具有有害性,会损害细胞成分。相比之下,有人提出甲醛与四氢叶酸(THF)的自发缩合有助于在以甲醇等C类碳源生长期间对这种中间体的同化作用。然而,这种缩合反应的速率尚不清楚,其对生长的可能贡献也仍然难以捉摸。在此,我们利用微生物平台来评估细胞环境中这种缩合反应的速率。我们构建了缺乏天然产生5,10-亚甲基-THF的酶的菌株。这些菌株只有在配备了能维持高细胞浓度甲醛的肌氨酸(N-甲基甘氨酸)氧化途径时,才能在基本培养基上生长,甲醛会与THF自发反应生成5,10-亚甲基-THF。我们使用通量平衡分析从观察到的生长速率推导出自发缩合反应的速率。据此,我们计算出,通过甲醛与THF的自发缩合获得其全部生物量的微生物,其倍增时间将超过三周。因此,这种自发反应不太可能作为甲醛同化的有效途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d912/7073904/491114ff9c8a/metabolites-10-00065-g001.jpg

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