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与常染色体隐性先天性鱼鳞病(ARCI)相关的新型 CYP4F22 突变。CYP4F22 c.1303C>T 起始突变的研究。

Novel CYP4F22 mutations associated with autosomal recessive congenital ichthyosis (ARCI). Study of the CYP4F22 c.1303C>T founder mutation.

机构信息

Fundación Pública Galega de Medicina Xenómica-SERGAS, Grupo de Medicina Xenómica-USC, CIBERER, IDIS, Santiago de Compostela, Spain.

Departamento de Ciencias Forenses, Anatomía Patolóxica, Xinecoloxía, Obstetricia e Pediatría, Universidade de Santiago de Compostela, Santiago de Compostela, Spain.

出版信息

PLoS One. 2020 Feb 18;15(2):e0229025. doi: 10.1371/journal.pone.0229025. eCollection 2020.

Abstract

Mutations in CYP4F22 cause autosomal recessive congenital ichthyosis (ARCI). However, less than 10% of all ARCI patients carry a mutation in CYP4F22. In order to identify the molecular basis of ARCI among our patients (a cohort of ninety-two Spanish individuals) we performed a mutational analysis using direct Sanger sequencing in combination with a multigene targeted NGS panel. From these, eight ARCI families (three of them with Moroccan origin) were found to carry five different CYP4F22 mutations, of which two were novel. Computational analysis showed that the mutations found were present in highly conserved residues of the protein and may affect its structure and function. Seven of the eight families were carriers of a highly recurrent CYP4F22 variant, c.1303C>T; p.(His435Tyr). A 12Mb haplotype was reconstructed in all c.1303C>T carriers by genotyping ten microsatellite markers flanking the CYP4F22 gene. A prevalent 2.52Mb haplotype was observed among Spanish carrier patients suggesting a recent common ancestor. A smaller core haplotype of 1.2Mb was shared by Spanish and Moroccan families. Different approaches were applied to estimate the time to the most recent common ancestor (TMRCA) of carrier patients with Spanish origin. The age of the mutation was calculated by using DMLE and BDMC2. The algorithms estimated that the c.1303C>T variant arose approximately 2925 to 4925 years ago, while Spanish carrier families derived from a common ancestor who lived in the XIII century. The present study reports five CYP4F22 mutations, two of them novel, increasing the number of CYP4F22 mutations currently listed. Additionally, our results suggest that the recurrent c.1303C>T change has a founder effect in Spanish population and c.1303C>T carrier families originated from a single ancestor with probable African ancestry.

摘要

CYP4F22 基因突变可导致常染色体隐性先天性鱼鳞病(ARCI)。然而,不到 10%的 ARCI 患者携带 CYP4F22 基因突变。为了确定我们的患者(一个由 92 名西班牙个体组成的队列)的 ARCI 的分子基础,我们使用直接 Sanger 测序结合多基因靶向 NGS 面板进行了突变分析。从这些患者中,发现了八个 ARCI 家系(其中三个来自摩洛哥)携带五个不同的 CYP4F22 突变,其中两个是新的。计算分析表明,发现的突变存在于蛋白质的高度保守残基中,可能影响其结构和功能。八个家系中有七个是 CYP4F22 变体 c.1303C>T 的携带者;p.(His435Tyr)。通过对 CYP4F22 基因侧翼的十个微卫星标记进行基因分型,在所有 c.1303C>T 携带者中重建了一个 12Mb 的单倍型。在西班牙携带者患者中观察到一个流行的 2.52Mb 单倍型,表明存在一个最近的共同祖先。一个较小的核心单倍型为 1.2Mb,为西班牙和摩洛哥家系所共有。应用不同的方法来估计具有西班牙血统的携带者患者的最近共同祖先(TMRCA)的时间。使用 DMLE 和 BDMC2 计算突变的年龄。算法估计 c.1303C>T 变体大约在 2925 到 4925 年前出现,而西班牙携带者家系来自于生活在 13 世纪的共同祖先。本研究报道了五个 CYP4F22 突变,其中两个是新的,增加了目前列出的 CYP4F22 突变数量。此外,我们的结果表明,反复出现的 c.1303C>T 变化在西班牙人群中具有起源效应,c.1303C>T 携带者家系起源于一个可能具有非洲血统的单一祖先。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9bf8/7028276/d29dfa61ea47/pone.0229025.g001.jpg

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