从安达曼海珊瑚中分离出的溶藻弧菌菌株S6-61和魔鬼弧菌菌株S7-71的基因组序列草图
Draft Genome Sequences of Vibrio alginolyticus Strain S6-61 and Vibrio diabolicus Strain S7-71, Isolated from Corals in the Andaman Sea.
作者信息
Deb Sushanta, Badhai Jhasketan, Das Subrata K
机构信息
Department of Biotechnology, Institute of Life Sciences, Bhubaneswar, India.
Department of Biotechnology, Institute of Life Sciences, Bhubaneswar, India
出版信息
Microbiol Resour Announc. 2020 Feb 20;9(8):e01465-19. doi: 10.1128/MRA.01465-19.
Abstract
We report the draft genome sequences of strain S6-61 and strain S7-71, isolated from the corals and , respectively. The genomes of strains S6-61 and S7-71 contain 4,880 and 4,641 protein coding genes, respectively, and harbor genes associated with the ectoine biosynthesis pathway.
摘要
我们报告了分别从珊瑚 和 中分离出的菌株S6 - 61和菌株S7 - 71的基因组序列草图。菌株S6 - 61和S7 - 71的基因组分别包含4880个和4641个蛋白质编码基因，并含有与依克多因生物合成途径相关的基因。
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3
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7
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