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三核铜生物催化中心形成硫氰酸脱氢酶的活性位点。

Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.

机构信息

Research Centre of Biotechnology, Russian Academy of Sciences, 119071 Moscow, Russia.

Department of Biotechnology, Delft University of Technology, Delft, 2629 HZ The Netherlands.

出版信息

Proc Natl Acad Sci U S A. 2020 Mar 10;117(10):5280-5290. doi: 10.1073/pnas.1922133117. Epub 2020 Feb 24.

Abstract

Biocatalytic copper centers are generally involved in the activation and reduction of dioxygen, with only few exceptions known. Here we report the discovery and characterization of a previously undescribed copper center that forms the active site of a copper-containing enzyme thiocyanate dehydrogenase (suggested EC 1.8.2.7) that was purified from the haloalkaliphilic sulfur-oxidizing bacterium of the genus ubiquitous in saline alkaline soda lakes. The copper cluster is formed by three copper ions located at the corners of a near-isosceles triangle and facilitates a direct thiocyanate conversion into cyanate, elemental sulfur, and two reducing equivalents without involvement of molecular oxygen. A molecular mechanism of catalysis is suggested based on high-resolution three-dimensional structures, electron paramagnetic resonance (EPR) spectroscopy, quantum mechanics/molecular mechanics (QM/MM) simulations, kinetic studies, and the results of site-directed mutagenesis.

摘要

生物催化铜中心通常参与氧气的活化和还原,但已知的例外很少。在这里,我们报告了一种以前未被描述的铜中心的发现和特性,该铜中心形成了含铜酶硫氰酸盐脱氢酶(建议 EC 1.8.2.7)的活性位点,该酶从在盐碱性苏打湖中普遍存在的耐盐嗜碱性硫氧化菌中纯化而来。该铜簇由三个位于近等腰三角形角上的铜离子组成,可直接将硫氰酸盐转化为氰酸盐、元素硫和两个还原当量,而不涉及分子氧。基于高分辨率三维结构、电子顺磁共振(EPR)光谱、量子力学/分子力学(QM/MM)模拟、动力学研究和定点突变的结果,提出了一种催化的分子机制。

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