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从考拉后肠分离出的一种新的肠道细菌——新种的多相特征分析

Polyphasic Characterisation of sp. nov., a New Enteric Bacterium Isolated from the Koala Hindgut.

作者信息

Boath Jarryd M, Dakhal Sudip, Van Thi Thu Hao, Moore Robert J, Dekiwadia Chaitali, Macreadie Ian G

机构信息

School of Science, RMIT University, Bundoora, Victoria 3083, Australia.

Australian Microscopy & Microanalysis Research Facility, RMIT University, Melbourne, Victoria 3000, Australia.

出版信息

Microorganisms. 2020 Feb 24;8(2):309. doi: 10.3390/microorganisms8020309.

Abstract

The genus is comprised of six rarely isolated species within the family. Representatives are Gram-negative motile bacilli, and are typically oxidase-negative, lipase-positive and resistant to colistin and cephalothin. In this study, a putative novel species (designated strain ZA_0188), isolated from the koala hindgut, was characterised using a polyphasic taxonomic approach. Maximum average nucleotide identity (ANI) and 16S ribosomal RNA (rRNA) similarity scores well below thresholds of species demarcation were reported, at 81.1% and 97.9%, respectively. Multilocus phylogenetic analysis indicated strain ZA_0188 was most similar to but divergent from recognised species. The isolate's genomic G+C content was determined as 53.0 mol%, >1% lower than previously reported in . Phenotypically, strain ZA_0188 was distinct from recognised species such as colistin- and cephalothin-sensitive, lipase-, sorbitol-, sucrose-, and Voges-Proskauer-negative, and melibiose-, arabinose-, arginine-, and rhamnose-positive. In preliminary experiments, strain ZA_0188 exhibited cellulase activity and high-level tolerance to eucalyptus oil compared to other enteric species surveyed. Collectively, these findings suggest that strain ZA_0188 represents a novel enteric species, for which the name is proposed.

摘要

该属由该科内六个极少分离到的物种组成。其代表菌株为革兰氏阴性运动杆菌,通常氧化酶阴性、脂肪酶阳性,对黏菌素和头孢噻吩耐药。在本研究中,采用多相分类学方法对从考拉后肠分离出的一个假定新物种(命名为菌株ZA_0188)进行了特性分析。据报道,其最大平均核苷酸同一性(ANI)和16S核糖体RNA(rRNA)相似性得分远低于物种划分阈值,分别为81.1%和97.9%。多位点系统发育分析表明,菌株ZA_0188与已确认的物种最相似,但又有所不同。该分离株的基因组G+C含量测定为53.0 mol%,比之前报道的低1%以上。在表型上,菌株ZA_0188与已确认的物种不同,如对黏菌素和头孢噻吩敏感、脂肪酶、山梨醇、蔗糖和Voges-Proskauer试验阴性,而蜜二糖、阿拉伯糖、精氨酸和鼠李糖试验阳性。在初步实验中,与其他被调查的肠道物种相比,菌株ZA_0188表现出纤维素酶活性和对桉叶油的高耐受性。总体而言,这些发现表明菌株ZA_0188代表一个新的肠道物种,并为此提出了命名。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73f7/7074957/6c1d7cab7e0e/microorganisms-08-00309-g001.jpg

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