耐离子液体解脂耶氏酵母PO1f及其优良进化菌株YlCW001的基因组草图组装
Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.
作者信息
Walker Caleb, Ryu Seunghyun, Haridas Sajeet, Na Hyunsoo, Zane Matthew, LaButti Kurt, Barry Kerrie, Grigoriev Igor V, Trinh Cong T
机构信息
Department of Chemical and Biomolecular Engineering, The University of Tennessee, Knoxville, Tennessee, USA.
U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
出版信息
Microbiol Resour Announc. 2020 Feb 27;9(9):e01356-19. doi: 10.1128/MRA.01356-19.
Abstract
Adaptive laboratory evolution of PO1f in the benchmark ionic liquid (IL; 1-ethyl-3-methylimidazolium acetate) produced a superior IL-tolerant microorganism, strain YlCW001. Here, we report the genome sequences of PO1f and YlCW001 to study the robustness of and its potential use as a microbial platform for producing fuels and chemicals.
摘要
在基准离子液体（IL；乙酸1-乙基-3-甲基咪唑鎓）中对PO1f进行适应性实验室进化，产生了一种耐受性更强的微生物菌株YlCW001。在此，我们报告PO1f和YlCW001的基因组序列，以研究其稳健性及其作为生产燃料和化学品的微生物平台的潜在用途。
相似文献
1
Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.耐离子液体解脂耶氏酵母PO1f及其优良进化菌株YlCW001的基因组草图组装
Microbiol Resour Announc. 2020 Feb 27;9(9):e01356-19. doi: 10.1128/MRA.01356-19.
2
Gene Coexpression Connectivity Predicts Gene Targets Underlying High Ionic-Liquid Tolerance in Yarrowia lipolytica.基因共表达连接预测了假丝酵母中高离子液体耐受性的潜在基因靶标。
mSystems. 2022 Aug 30;7(4):e0034822. doi: 10.1128/msystems.00348-22. Epub 2022 Jul 12.
3
Exceptional solvent tolerance in Yarrowia lipolytica is enhanced by sterols.酵母油脂酵母通过固醇提高了对有机溶剂的耐受性。
Metab Eng. 2019 Jul;54:83-95. doi: 10.1016/j.ymben.2019.03.003. Epub 2019 Mar 15.
4
Draft Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica PO1f, a Commonly Used Metabolic Engineering Host.产油酵母解脂耶氏酵母PO1f的基因组序列草图，一种常用的代谢工程宿主
Genome Announc. 2014 Jul 3;2(4):e00652-14. doi: 10.1128/genomeA.00652-14.
5
Improving ionic liquid tolerance in Saccharomyces cerevisiae through heterologous expression and directed evolution of an ILT1 homolog from Yarrowia lipolytica.通过来自解脂耶氏酵母的 ILT1 同源物的异源表达和定向进化提高酿酒酵母对离子液体的耐受性。
J Ind Microbiol Biotechnol. 2019 Dec;46(12):1715-1724. doi: 10.1007/s10295-019-02228-9. Epub 2019 Aug 19.
6
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.五株解脂耶氏酵母的基因组草图组装，这些菌株表现出高脂质产量、戊糖利用能力以及从未解毒的木质纤维素生物质水解物中分泌糖醇的能力。
Microbiol Resour Announc. 2018 Sep 27;7(12). doi: 10.1128/MRA.01040-18. eCollection 2018 Sep.
7
Simultaneous saccharification and fermentation of cellulose in ionic liquid for efficient production of α-ketoglutaric acid by Yarrowia lipolytica.利用离子液体进行纤维素的同步糖化和发酵，通过解脂耶氏酵母高效生产 α-酮戊二酸。
Appl Microbiol Biotechnol. 2015 May;99(10):4237-44. doi: 10.1007/s00253-015-6521-5. Epub 2015 Mar 19.
8
Understanding Functional Roles of Native Pentose-Specific Transporters for Activating Dormant Pentose Metabolism in Yarrowia lipolytica.了解天然戊糖特异性转运蛋白在激活解脂耶氏酵母休眠戊糖代谢中的功能作用。
Appl Environ Microbiol. 2018 Jan 17;84(3). doi: 10.1128/AEM.02146-17. Print 2018 Feb 1.
9
Engineering the oleaginous yeast Yarrowia lipolytica to produce the aroma compound β-ionone.通过工程化产油酵母解脂耶氏酵母来生产香气化合物β-紫罗兰酮。
Microb Cell Fact. 2018 Sep 1;17(1):136. doi: 10.1186/s12934-018-0984-x.
10
Engineering for Enhanced Production of Arbutin.工程学促进熊果苷的生产。
J Agric Food Chem. 2020 Feb 5;68(5):1364-1372. doi: 10.1021/acs.jafc.9b07151. Epub 2020 Jan 24.
引用本文的文献
1
Proteomes reveal metabolic capabilities of for biological upcycling of polyethylene into high-value chemicals.蛋白质组学揭示了 的代谢能力，可将聚乙烯生物升级为高价值化学品。
mSystems. 2023 Dec 21;8(6):e0074123. doi: 10.1128/msystems.00741-23. Epub 2023 Oct 26.
2
Gene Coexpression Connectivity Predicts Gene Targets Underlying High Ionic-Liquid Tolerance in Yarrowia lipolytica.基因共表达连接预测了假丝酵母中高离子液体耐受性的潜在基因靶标。
mSystems. 2022 Aug 30;7(4):e0034822. doi: 10.1128/msystems.00348-22. Epub 2022 Jul 12.
3
Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeres.构建柠檬酸生产酵母DSM 3286的近连续基因组序列，解析核糖体DNA（rDNA）簇和端粒。
NAR Genom Bioinform. 2021 Oct 14;3(4):lqab085. doi: 10.1093/nargab/lqab085. eCollection 2021 Dec.
4
Strains and Their Biotechnological Applications: How Natural Biodiversity and Metabolic Engineering Could Contribute to Cell Factories Improvement.菌株及其生物技术应用：自然生物多样性和代谢工程如何助力细胞工厂的改进
J Fungi (Basel). 2021 Jul 10;7(7):548. doi: 10.3390/jof7070548.
本文引用的文献
1
Exceptional solvent tolerance in Yarrowia lipolytica is enhanced by sterols.酵母油脂酵母通过固醇提高了对有机溶剂的耐受性。
Metab Eng. 2019 Jul;54:83-95. doi: 10.1016/j.ymben.2019.03.003. Epub 2019 Mar 15.
2
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.五株解脂耶氏酵母的基因组草图组装，这些菌株表现出高脂质产量、戊糖利用能力以及从未解毒的木质纤维素生物质水解物中分泌糖醇的能力。
Microbiol Resour Announc. 2018 Sep 27;7(12). doi: 10.1128/MRA.01040-18. eCollection 2018 Sep.
3
Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica.酵母脂解酵母从酵母相到菌丝相的调控。
mSphere. 2018 Dec 5;3(6):e00541-18. doi: 10.1128/mSphere.00541-18.
4
Understanding Functional Roles of Native Pentose-Specific Transporters for Activating Dormant Pentose Metabolism in Yarrowia lipolytica.了解天然戊糖特异性转运蛋白在激活解脂耶氏酵母休眠戊糖代谢中的功能作用。
Appl Environ Microbiol. 2018 Jan 17;84(3). doi: 10.1128/AEM.02146-17. Print 2018 Feb 1.
5
Lipid production in Yarrowia lipolytica is maximized by engineering cytosolic redox metabolism.通过工程化细胞溶质氧化还原代谢最大化解脂耶氏酵母中的脂类生产。
Nat Biotechnol. 2017 Feb;35(2):173-177. doi: 10.1038/nbt.3763. Epub 2017 Jan 16.
6
Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis.离子液体影响生物能源原料降解微生物群落以及与多糖水解相关的酶的转录。
mSystems. 2016 Dec 13;1(6). doi: 10.1128/mSystems.00120-16. eCollection 2016 Nov-Dec.
7
Robust succinic acid production from crude glycerol using engineered Yarrowia lipolytica.利用工程改造的解脂耶氏酵母从粗甘油中高效生产琥珀酸。
Biotechnol Biofuels. 2016 Aug 30;9(1):179. doi: 10.1186/s13068-016-0597-8. eCollection 2016.
8
Enhanced citric acid production by a yeast Yarrowia lipolytica over-expressing a pyruvate carboxylase gene.通过过表达丙酮酸羧化酶基因的解脂耶氏酵母提高柠檬酸产量。
Bioprocess Biosyst Eng. 2016 Aug;39(8):1289-96. doi: 10.1007/s00449-016-1607-8. Epub 2016 Apr 21.
9
Activating and Elucidating Metabolism of Complex Sugars in Yarrowia lipolytica.解脂耶氏酵母中复合糖代谢的激活与阐释
Appl Environ Microbiol. 2015 Dec 18;82(4):1334-1345. doi: 10.1128/AEM.03582-15. Print 2016 Feb 15.
10
Simultaneous saccharification and fermentation of cellulose in ionic liquid for efficient production of α-ketoglutaric acid by Yarrowia lipolytica.利用离子液体进行纤维素的同步糖化和发酵，通过解脂耶氏酵母高效生产 α-酮戊二酸。
Appl Microbiol Biotechnol. 2015 May;99(10):4237-44. doi: 10.1007/s00253-015-6521-5. Epub 2015 Mar 19.
Zotero 插件