Interdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, GA 30332, United States of America.
Department of Biosciences, University of Oslo, Oslo, Norway.
Biochim Biophys Acta Gen Subj. 2020 Jul;1864(7):129581. doi: 10.1016/j.bbagen.2020.129581. Epub 2020 Feb 27.
In Gram-negative bacteria, type Va and Vc autotransporters are proteins that contain both a secreted virulence factor (the "passenger" domain) and a β-barrel that aids its export. While it is known that the folding and insertion of the β-barrel domain utilize the β-barrel assembly machinery (BAM) complex, how the passenger domain is secreted and folded across the membrane remains to be determined. The hairpin model states that passenger domain secretion occurs independently through the fully-formed and membrane-inserted β-barrel domain via a hairpin folding intermediate. In contrast, the BamA-assisted model states that the passenger domain is secreted through a hybrid of BamA, the essential subunit of the BAM complex, and the β-barrel domain of the autotransporter.
To ascertain the models' plausibility, we have used molecular dynamics to simulate passenger domain secretion for two autotransporters, EspP and YadA.
We observed that each protein's β-barrel is unable to accommodate the secreting passenger domain in a hairpin configuration without major structural distortions. Additionally, the force required for secretion through EspP's β-barrel is more than that through the BamA β-barrel.
Secretion of autotransporters most likely occurs through an incompletely formed β-barrel domain of the autotransporter in conjunction with BamA.
Secretion of virulence factors is a process used by practically all pathogenic Gram-negative bacteria. Understanding this process is a necessary step towards limiting their infectious capacity.
在革兰氏阴性菌中,Va 型和 Vc 型自转运蛋白是同时含有一个分泌性毒力因子(“乘客”结构域)和一个帮助其输出的β桶的蛋白质。虽然众所周知,β桶结构域的折叠和插入利用β桶组装机制(BAM)复合物,但乘客结构域如何穿过膜分泌和折叠仍有待确定。发夹模型表明,乘客结构域的分泌是通过完全形成和插入膜的β桶结构域通过发夹折叠中间体独立发生的。相比之下,BamA 辅助模型表明,乘客结构域是通过 BamA(BAM 复合物的必需亚基)和自转运蛋白的β桶域的杂交体分泌的。
为了确定这些模型的合理性,我们使用分子动力学模拟了两种自转运蛋白 EspP 和 YadA 的乘客结构域分泌。
我们观察到,没有大的结构扭曲,每个蛋白质的β桶都无法容纳发夹构型中的分泌性乘客结构域。此外,通过 EspP 的β桶进行分泌所需的力超过通过 BamA 的β桶。
自转运蛋白的分泌最可能通过自转运蛋白的不完全形成的β桶结构域与 BamA 一起发生。
毒力因子的分泌是几乎所有致病性革兰氏阴性菌都使用的一种过程。了解这个过程是限制它们感染能力的必要步骤。