• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

某物种和另一物种中该基因家族的全基因组鉴定与表达分析

Genome-wide identification and expression analysis of the gene family in and .

作者信息

Ling Lei, Qu Yue, Zhu Jintao, Wang Dan, Guo Changhong

机构信息

College of Life Science and Technology, Harbin Normal University, Harbin, China.

出版信息

PeerJ. 2020 Feb 4;8:e8471. doi: 10.7717/peerj.8471. eCollection 2020.

DOI:10.7717/peerj.8471
PMID:32117614
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7006518/
Abstract

Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. genes have been identified in various plants; however, there are no systematic reports in or . Herein, we identified 19 and 32 genes in and , respectively. A total of these genes were divided into eight groups (I-VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these genes might have originated from a common ancestor. In silico analyses demonstrated that these genes were expressed in different tissues. qRT-PCR analysis indicated that the genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of genes from and and provides a solid foundation for further research of the specific functions of VQ proteins.

摘要

缬氨酸-谷氨酰胺(VQ)蛋白是植物特有的蛋白,在植物发育以及生物和非生物胁迫响应中发挥关键作用。已在多种植物中鉴定出相关基因;然而,在[具体物种1]或[具体物种2]中尚无系统报道。在此,我们分别在[具体物种1]和[具体物种2]中鉴定出19个和32个VQ基因。基于系统发育分析,这些基因总共被分为八组(I - VIII)。基因结构分析和基序模式表明这些VQ基因可能起源于一个共同祖先。电子分析表明这些VQ基因在不同组织中表达。qRT-PCR分析表明这些VQ基因在多种非生物胁迫下受到差异调控。本报告首次对[具体物种1]和[具体物种2]的VQ基因进行了系统分析,为进一步研究VQ蛋白的特定功能奠定了坚实基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/feae23590ddd/peerj-08-8471-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/f731f1b4eb29/peerj-08-8471-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/c6a836df3add/peerj-08-8471-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/c99ec01c4643/peerj-08-8471-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/33df3ce1903a/peerj-08-8471-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/f971d1e687b8/peerj-08-8471-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/e58e8c700159/peerj-08-8471-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/05fd4b897488/peerj-08-8471-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/a10a85b4450e/peerj-08-8471-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/25de12f81629/peerj-08-8471-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/e4ec2cb0a69e/peerj-08-8471-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/feae23590ddd/peerj-08-8471-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/f731f1b4eb29/peerj-08-8471-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/c6a836df3add/peerj-08-8471-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/c99ec01c4643/peerj-08-8471-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/33df3ce1903a/peerj-08-8471-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/f971d1e687b8/peerj-08-8471-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/e58e8c700159/peerj-08-8471-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/05fd4b897488/peerj-08-8471-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/a10a85b4450e/peerj-08-8471-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/25de12f81629/peerj-08-8471-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/e4ec2cb0a69e/peerj-08-8471-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8011/7006518/feae23590ddd/peerj-08-8471-g011.jpg

相似文献

1
Genome-wide identification and expression analysis of the gene family in and .某物种和另一物种中该基因家族的全基因组鉴定与表达分析
PeerJ. 2020 Feb 4;8:e8471. doi: 10.7717/peerj.8471. eCollection 2020.
2
Mining the Cicer arietinum genome for the mildew locus O (Mlo) gene family and comparative evolutionary analysis of the Mlo genes from Medicago truncatula and some other plant species.从鹰嘴豆基因组中挖掘白粉病抗性位点O(Mlo)基因家族,并对蒺藜苜蓿和其他一些植物物种的Mlo基因进行比较进化分析。
J Plant Res. 2017 Mar;130(2):239-253. doi: 10.1007/s10265-016-0868-2. Epub 2016 Nov 30.
3
Genome-wide identification and expression analysis of the gene family in L.在 L. 中全基因组鉴定和 基因家族的表达分析
PeerJ. 2022 Jan 21;10:e12827. doi: 10.7717/peerj.12827. eCollection 2022.
4
Genome-wide comparative analysis of the valine glutamine motif containing genes in four Ipomoea species.对四个番薯属物种中含缬氨酸-谷氨酰胺基序的基因进行全基因组比较分析。
BMC Plant Biol. 2023 Apr 22;23(1):209. doi: 10.1186/s12870-023-04235-6.
5
Genome-Wide Identification and Analysis of the Polycomb Group Family in .. 中多梳蛋白家族的全基因组鉴定与分析
Int J Mol Sci. 2021 Jul 14;22(14):7537. doi: 10.3390/ijms22147537.
6
Genome-wide analysis of VQ motif-containing proteins in Moso bamboo (Phyllostachys edulis).毛竹(Phyllostachys edulis)中含VQ基序蛋白的全基因组分析。
Planta. 2017 Jul;246(1):165-181. doi: 10.1007/s00425-017-2693-9. Epub 2017 Apr 17.
7
Valine-glutamine (VQ) motif coding genes are ancient and non-plant-specific with comprehensive expression regulation by various biotic and abiotic stresses.缬氨酸-谷氨酰胺(VQ)基序编码基因是古老的,非植物特异性的,受到各种生物和非生物胁迫的全面表达调控。
BMC Genomics. 2018 May 9;19(1):342. doi: 10.1186/s12864-018-4733-7.
8
Genome-wide identification and expression analyses of WRKY transcription factor family members from chickpea (Cicer arietinum L.) reveal their role in abiotic stress-responses.鹰嘴豆(Cicer arietinum L.)WRKY转录因子家族成员的全基因组鉴定与表达分析揭示了它们在非生物胁迫响应中的作用。
Genes Genomics. 2019 Apr;41(4):467-481. doi: 10.1007/s13258-018-00780-9. Epub 2019 Jan 12.
9
Genome-wide analysis of the TCP transcription factor genes in five legume genomes and their response to salt and drought stresses.五个豆科基因组中 TCP 转录因子基因的全基因组分析及其对盐和干旱胁迫的响应。
Funct Integr Genomics. 2020 Jul;20(4):537-550. doi: 10.1007/s10142-020-00733-0. Epub 2020 Feb 7.
10
Genome-wide identification and expression analysis of VQ gene family under abiotic stress in Coix lacryma-jobi L.薏米非生物胁迫相关 VQ 基因家族的全基因组鉴定和表达分析
BMC Plant Biol. 2023 Jun 20;23(1):327. doi: 10.1186/s12870-023-04294-9.

引用本文的文献

1
Identification of the Valine-Glutamine gene family in Chenopodium quinoa Willd and analysis of its expression pattern and subcellular localization under drought stress.藜麦中缬氨酸-谷氨酰胺基因家族的鉴定及其在干旱胁迫下的表达模式和亚细胞定位分析。
BMC Genomics. 2025 Mar 14;26(1):252. doi: 10.1186/s12864-025-11313-6.
2
Comparative genomics, microsynteny, ancestral state reconstruction and selection pressure analysis across distinctive genomes and sub-genomes of Brassicaceae for analysis of evolutionary history of gene family.通过十字花科独特的基因组和亚基因组进行比较基因组学、微共线性、祖先状态重建和选择压力分析,以分析基因家族的进化历史。
Physiol Mol Biol Plants. 2023 Oct;29(10):1505-1523. doi: 10.1007/s12298-023-01347-z. Epub 2023 Sep 1.
3

本文引用的文献

1
Identification, characterization and expression analysis of the VQ motif-containing gene family in tea plant (Camellia sinensis).鉴定、特征分析和茶(Camellia sinensis)含 VQ 基序基因家族的表达分析。
BMC Genomics. 2018 Sep 26;19(1):710. doi: 10.1186/s12864-018-5107-x.
2
Subfunctionalization versus neofunctionalization after whole-genome duplication.全基因组复制后的亚功能化与新功能化
Nat Genet. 2018 Jul;50(7):908-909. doi: 10.1038/s41588-018-0162-4.
3
The effects of repeated whole genome duplication events on the evolution of cytokinin signaling pathway.
Genome-wide identification and expression analysis of VQ gene family under abiotic stress in Coix lacryma-jobi L.薏米非生物胁迫相关 VQ 基因家族的全基因组鉴定和表达分析
BMC Plant Biol. 2023 Jun 20;23(1):327. doi: 10.1186/s12870-023-04294-9.
4
Genome-wide survey of catalase genes in Brassica rapa, Brassica oleracea, and Brassica napus: identification, characterization, molecular evolution, and expression profiling of BnCATs in response to salt and cadmium stress.甘蓝型油菜、白菜型油菜和甘蓝型油菜中过氧化氢酶基因的全基因组调查:BnCATs 对盐和镉胁迫的响应的鉴定、特征分析、分子进化和表达谱。
Protoplasma. 2023 May;260(3):899-917. doi: 10.1007/s00709-022-01822-6. Epub 2022 Dec 10.
5
A Comprehensive Identification and Expression Analysis of VQ Motif-Containing Proteins in Sugarcane ( L.) under Phytohormone Treatment and Cold Stress.甘蔗( L.)中含 VQ 基序蛋白的综合鉴定和表达分析在植物激素处理和冷胁迫下。
Int J Mol Sci. 2022 Jun 6;23(11):6334. doi: 10.3390/ijms23116334.
6
Recent Duplications Dominate VQ and WRKY Gene Expansions in Six Species.近期重复事件主导了六个物种中VQ和WRKY基因的扩增。
Int J Genomics. 2021 Dec 17;2021:4066394. doi: 10.1155/2021/4066394. eCollection 2021.
7
Valine-Glutamine Proteins in Plant Responses to Oxygen and Nitric Oxide.缬氨酸 - 谷氨酰胺蛋白在植物对氧气和一氧化氮的响应中
Front Plant Sci. 2021 Jan 25;11:632678. doi: 10.3389/fpls.2020.632678. eCollection 2020.
8
A comprehensive analysis of cotton VQ gene superfamily reveals their potential and extensive roles in regulating cotton abiotic stress.对棉花VQ基因超家族的综合分析揭示了它们在调节棉花非生物胁迫中的潜在广泛作用。
BMC Genomics. 2020 Nov 16;21(1):795. doi: 10.1186/s12864-020-07171-z.
重复全基因组复制事件对细胞分裂素信号通路进化的影响。
BMC Evol Biol. 2018 May 29;18(1):76. doi: 10.1186/s12862-018-1153-x.
4
Structural and functional analyses of genes encoding VQ proteins in apple.苹果中编码 VQ 蛋白的基因的结构和功能分析。
Plant Sci. 2018 Jul;272:208-219. doi: 10.1016/j.plantsci.2018.04.029. Epub 2018 May 3.
5
Valine-glutamine (VQ) motif coding genes are ancient and non-plant-specific with comprehensive expression regulation by various biotic and abiotic stresses.缬氨酸-谷氨酰胺(VQ)基序编码基因是古老的,非植物特异性的,受到各种生物和非生物胁迫的全面表达调控。
BMC Genomics. 2018 May 9;19(1):342. doi: 10.1186/s12864-018-4733-7.
6
Arabidopsis VQ10 interacts with WRKY8 to modulate basal defense against Botrytis cinerea.拟南芥 VQ10 与 WRKY8 互作,调节对灰葡萄孢的基础防御。
J Integr Plant Biol. 2018 Oct;60(10):956-969. doi: 10.1111/jipb.12664. Epub 2018 Jul 10.
7
Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species.两种梨属植物VQ基因的全基因组鉴定、进化及表达分析
Genes (Basel). 2018 Apr 23;9(4):224. doi: 10.3390/genes9040224.
8
WRKY2/34-VQ20 Modules in Negatively Regulate Expression of a Trio of Related MYB Transcription Factors During Pollen Development.WRKY2/34-VQ20模块在花粉发育过程中负调控一组相关MYB转录因子的表达。
Front Plant Sci. 2018 Mar 19;9:331. doi: 10.3389/fpls.2018.00331. eCollection 2018.
9
Microevolution of the VQ gene family in six species of Fragaria.六倍体草莓属植物 VQ 基因家族的微进化
Genome. 2018 Jan;61(1):49-57. doi: 10.1139/gen-2017-0038. Epub 2017 Oct 30.
10
Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.拟南芥 WRKY2 和 WRKY34 转录因子与 VQ20 蛋白相互作用,调节花粉发育和功能。
Plant J. 2017 Sep;91(6):962-976. doi: 10.1111/tpj.13619. Epub 2017 Jul 20.