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SHV-11 基因在菌株多药耐药中的作用及其通过基因网络分析理解其机制

Role of SHV-11, a Class A β-Lactamase, Gene in Multidrug Resistance Among Strains and Understanding Its Mechanism by Gene Network Analysis.

机构信息

Medical and Biological Computing Laboratory, School of Biosciences and Technology, VIT, Vellore, India.

出版信息

Microb Drug Resist. 2020 Aug;26(8):900-908. doi: 10.1089/mdr.2019.0430. Epub 2020 Mar 2.

Abstract

The rapid emergence of β-lactam resistance in gram-negative bacteria is a major problem in the treatment of infections caused by pathogenic bacterial strains, in particular . In our study, we are presenting a systems biology approach to understand the role of SHV-11 gene in drug resistance mechanism patterns in strain. From the results, we have observed that the SHV-11 gene has a role in drug resistance mechanism along with its functional partner genes , , , , , , , , , and . We have also observed that of 51 genes, 27 genes were enriched in various Gene Ontology terms such as DNA metabolic process, DNA repair, and response to stress. The genes , , , , , , , , , and constitute >41% of the total interactions; thus, these genes can be considered as hub nodes in the network, and they can be used as the potential drug targets. Drug exposure leads to the DNA damage in bacterial spp. We observed that the SHV11 gene along with the functional partners help in maintaining the genomic integrity by withstanding the environmental stress by inducing DNA damage repair mechanism. Our results provide a detailed understanding on the role of SHV-11 gene in drug resistance mechanisms in , and we are of the opinion that our results will be useful for researchers exploring the antibiotic resistance mechanisms in pathogenic bacteria.

摘要

β-内酰胺类抗生素耐药性在革兰氏阴性菌中的迅速出现是治疗病原菌感染的主要问题。在我们的研究中,我们采用系统生物学方法来了解 SHV-11 基因在 菌株药物耐药机制中的作用。结果表明,SHV-11 基因与功能伙伴基因 、 、 、 、 、 、 、 一起在药物耐药机制中发挥作用。我们还观察到,在 51 个基因中,有 27 个基因富集在各种基因本体论术语中,如 DNA 代谢过程、DNA 修复和应激反应。基因 、 、 、 、 、 、 、 和 构成总相互作用的 >41%;因此,这些基因可以被视为网络中的枢纽节点,并且可以作为潜在的药物靶点。药物暴露会导致细菌 spp 的 DNA 损伤。我们观察到,SHV11 基因及其功能伙伴通过诱导 DNA 损伤修复机制来帮助维持基因组完整性,从而抵御环境压力。我们的研究结果提供了关于 SHV-11 基因在 菌株药物耐药机制中的作用的详细了解,我们认为我们的结果将对探索病原菌抗生素耐药机制的研究人员有用。

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