Werner Johannes, Nour Eman, Bunk Boyke, Spröer Cathrin, Smalla Kornelia, Springael Dirk, Öztürk Başak
Department of Biological Oceanography, Leibniz Institute for Baltic Sea Research, Rostock, Germany.
Institute for Epidemiology and Pathogen Diagnostics, Julius Kühn-Institut, Federal Research Centre for Cultivated Plants (JKI), Braunschweig, Germany.
Front Microbiol. 2020 Feb 18;11:149. doi: 10.3389/fmicb.2020.00149. eCollection 2020.
PromA plasmids are broad host range (BHR) plasmids, which are often cryptic and hence have an uncertain ecological role. We present three novel PromA γ plasmids which carry genes associated with degradation of the phenylurea herbicide linuron, two of which originated from unrelated hosts isolated from different environments (pPBL-H3-2 and pBPS33-2), and one (pEN1) which was exogenously captured from an on-farm biopurification system (BPS). sp. plasmid pBPS33-2 carries all three necessary gene clusters () determining the three main steps for conversion of linuron to Krebs cycle intermediates, while pEN1 only determines the initial linuron hydrolysis step. sp. plasmid pPBL-H3-2 exists as two variants, both containing but with the and gene modules interchanged between each other at exactly the same location. Linuron catabolic gene clusters that determine the same step were identical on all plasmids, encompassed in differently arranged constellations and characterized by the presence of multiple IS elements. In all plasmids except pEN1, the insertion spot of the catabolic genes in the PromA γ plasmids was the same. Highly similar PromA plasmids carrying the linuron degrading gene cargo at the same insertion spot were previously identified in linuron degrading sp. Interestingly, in both populations not every PromA plasmid copy carries catabolic genes. The results indicate that PromA plasmids are important vehicles of linuron catabolic gene dissemination, rather than being cryptic and only important for the mobilization of other plasmids.
PromA质粒是广宿主范围(BHR)质粒,通常是隐蔽型的,因此其生态作用尚不确定。我们展示了三种新型PromA γ质粒,它们携带与苯基脲除草剂利谷隆降解相关的基因,其中两种起源于从不同环境中分离出的不相关宿主(pPBL-H3-2和pBPS33-2),另一种(pEN1)是从农场生物净化系统(BPS)中捕获的外源质粒。sp.质粒pBPS33-2携带所有三个必需的基因簇(),这些基因簇决定了利谷隆转化为三羧酸循环中间体的三个主要步骤,而pEN1仅决定利谷隆的初始水解步骤。sp.质粒pPBL-H3-2以两种变体形式存在,两者都含有,但和基因模块在完全相同的位置相互交换。在所有质粒上,决定相同步骤的利谷隆分解代谢基因簇是相同的,以不同的排列组合形式存在,并以多个插入序列元件的存在为特征。除pEN1外,在所有PromA γ质粒中,分解代谢基因的插入位点都是相同的。先前在降解利谷隆的sp.中鉴定出在相同插入位点携带利谷隆降解基因负载的高度相似PromA质粒。有趣的是,在这两个种群中,并非每个PromA质粒拷贝都携带分解代谢基因。结果表明,PromA质粒是利谷隆分解代谢基因传播的重要载体,而不是隐蔽型的,仅对其他质粒的转移重要。