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2
Alleles of a gene differ in pleiotropy, often mediated through currency metabolite production, in E. coli and yeast metabolic simulations.在大肠杆菌和酵母代谢模拟中,一个基因的等位基因在多效性方面存在差异,这种差异通常通过货币代谢产物的产生来介导。
Sci Rep. 2018 Nov 22;8(1):17252. doi: 10.1038/s41598-018-35092-1.
3
Metabolic engineering of Corynebacterium glutamicum for improved L-arginine synthesis by enhancing NADPH supply.通过增强 NADPH 供应来进行谷氨酸棒杆菌的代谢工程改造,以提高 L-精氨酸的合成。
J Ind Microbiol Biotechnol. 2019 Jan;46(1):45-54. doi: 10.1007/s10295-018-2103-8. Epub 2018 Nov 16.
4
In silico model-guided identification of transcriptional regulator targets for efficient strain design.基于计算模型的转录调控因子靶基因鉴定及其在高效菌株设计中的应用。
Microb Cell Fact. 2018 Oct 25;17(1):167. doi: 10.1186/s12934-018-1015-7.
5
A Review of Dynamic Modeling Approaches and Their Application in Computational Strain Optimization for Metabolic Engineering.动态建模方法及其在代谢工程计算菌株优化中的应用综述
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Attenuated cutaneous microvascular function in healthy young African Americans: Role of intradermal l-arginine supplementation.健康年轻非裔美国人皮肤微血管功能减弱:皮内 l-精氨酸补充的作用。
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Leucine supplementation after mechanical stimulation activates protein synthesis via L-type amino acid transporter 1 in vitro.体外机械刺激后亮氨酸补充通过 L 型氨基酸转运蛋白 1 激活蛋白质合成。
J Cell Biochem. 2018 Feb;119(2):2094-2101. doi: 10.1002/jcb.26371. Epub 2017 Sep 18.
8
Roles of export genes cgmA and lysE for the production of L-arginine and L-citrulline by Corynebacterium glutamicum.出口基因 cgmA 和 lysE 在谷氨酸棒杆菌生产 L-精氨酸和 L-瓜氨酸中的作用。
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Increased L-arginine Production by Site-directed Mutagenesis of N-acetyl-L-glutamate Kinase and proB Gene Deletion in Corynebacterium crenatum.通过对钝齿棒杆菌中N-乙酰-L-谷氨酸激酶进行定点诱变和缺失proB基因提高L-精氨酸产量。
Biomed Environ Sci. 2015 Dec;28(12):864-74. doi: 10.3967/bes2015.120.

基于计算机基因组规模代谢网络模型指导的基因工程提高L-精氨酸产量

Improvement of l-arginine production by in silico genome-scale metabolic network model guided genetic engineering.

作者信息

Huang Mingzhu, Zhao Yue, Li Rong, Huang Weihua, Chen Xuelan

机构信息

1Department of Life Science, Jiangxi Normal University, Nanchang, 330096 People's Republic of China.

2School of Life Science, Key Laboratory of Functional Small Organic Molecule of Ministry of Education, Jiangxi Normal University, 99 Ziyang Road, Nanchang, 330096 People's Republic of China.

出版信息

3 Biotech. 2020 Mar;10(3):126. doi: 10.1007/s13205-020-2114-9. Epub 2020 Feb 19.

DOI:10.1007/s13205-020-2114-9
PMID:32140378
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7031459/
Abstract

Genome-scale metabolic network model (GSMM) is an important in silico tool that can efficiently predict the target genes to be modulated. A -M4 Cc_iKK446_arginine model was constructed on the basis of the GSMM of ATCC 13032 Cg_iKK446. Sixty-four gene deletion sites, twenty-four gene enhancement sites, and seven gene attenuation sites were determined for the improvement of l-arginine production in engineered . Among these sites, the effects of disrupting , , , and and overexpressing on l-arginine production were investigated. Moreover, the strain CCM007 with deleted , , , and and overexpressed produced 24.85 g/L l-arginine. This finding indicated a 106.8% improvement in l-arginine production compared with that in CCM01. GSMM is an excellent tool for identifying target genes to promote l-arginine accumulation in engineered .

摘要

基因组规模代谢网络模型(GSMM)是一种重要的计算机模拟工具,可有效预测待调控的靶基因。基于ATCC 13032 Cg_iKK446的GSMM构建了A -M4 Cc_iKK446_精氨酸模型。为提高工程菌中L-精氨酸的产量,确定了64个基因缺失位点、24个基因增强位点和7个基因弱化位点。在这些位点中,研究了破坏、、、和过表达对L-精氨酸产量的影响。此外,缺失、、、并过表达的菌株CCM007产生了24.85 g/L的L-精氨酸。这一发现表明,与CCM01相比,L-精氨酸产量提高了106.8%。GSMM是识别促进工程菌中L-精氨酸积累的靶基因的优秀工具。