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计算机模拟与实验:冰岛软石上氨基酸经伽马射线辐射生成蝶呤的过程:前生物化学视角。

Computer and Experimental Simulation of Alloxazine Synthesis from Gamma Irradiation of Amino Acids on Iceland Spar: A Prebiotic Chemistry Perspective.

机构信息

Facultad de Estudios Superiores Iztacala, UNAM, Av. de los Barrios 1, Los Reyes Iztacala, 54090, Tlalnepantla de Baz, Estado de México, Mexico.

Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito exterior s/n, C.P. 04510, México, DF, Mexico.

出版信息

J Mol Evol. 2020 Apr;88(3):284-291. doi: 10.1007/s00239-020-09933-5. Epub 2020 Mar 6.

Abstract

On ancient Earth, environmental conditions favored prebiotic chemical reactions. In the Archean, some molecules with conjugated rings might have been synthesized, displaying structural stability in the Archean in the presence of ionizing radiation and hydration-dehydration events. Additionally, it is suggested that on ancient Earth, calcite was a common mineral promoting organic compound synthesis. In the present work a study of the interaction of amino acid mixtures with the (104) surface of calcite is presented. Our preliminary results show the abiotic synthesis of alloxazine (a flavin with relevant photochemical properties). Computer simulations were performed in HyperChem 8.0.1. by means of MM molecular mechanics and PM3 semi-empirical methods, in 27 possible amino acid trimers of alanine, glycine and lysine. Alloxazine formation is possible by the gamma irradiation of amino acids. The computer simulations show that trimers GGG and GGA promote the further transformation from diketopiperazines (DKP's) and KGK to alloxazine. The computer simulations with free radicals are not stable when alloxazine is interacting with the calcite surface. Experiments in anoxygenic environments with hydration-dehydration events in gamma irradiated samples allow the abiotic formation of flavins, DKP's and a heterocycle compound with possible relevance in prebiotic chemistry.

摘要

在古代地球上,环境条件有利于前生物化学反应。在太古宙,一些具有共轭环的分子可能已经被合成出来,在存在电离辐射和水合-脱水事件的情况下,在太古宙表现出结构稳定性。此外,有人认为,在古代地球上,方解石是一种常见的促进有机化合物合成的矿物。在本工作中,研究了氨基酸混合物与方解石(104)表面的相互作用。我们的初步结果表明,在非生物条件下可以合成别嘌呤(一种具有相关光化学性质的黄素)。使用 HyperChem 8.0.1 中的 MM 分子力学和 PM3 半经验方法,在丙氨酸、甘氨酸和赖氨酸的 27 种可能的氨基酸三聚体中进行了计算机模拟。γ射线辐照氨基酸可以形成别嘌呤。计算机模拟表明,GGG 和 GGA 三聚体促进二酮哌嗪(DKP)和 KGK 进一步转化为别嘌呤。当别嘌呤与方解石表面相互作用时,带有自由基的计算机模拟不稳定。在缺氧环境中进行的实验,以及在γ辐照样品中进行的水合-脱水事件,允许在非生物条件下形成黄素、DKP 和具有前生物化学可能相关性的杂环化合物。

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